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    lox4 linoleate 9S-lipoxygenase4 [ Zea mays ]

    Gene ID: 100037803, updated on 14-Dec-2023

    Summary

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    Gene symbol
    lox4
    Gene description
    linoleate 9S-lipoxygenase4
    Locus tag
    ZEAMMB73_Zm00001d033624
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G109056
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (270833829..270849306)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (269056614..269072089)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100284442 Neighboring gene linoleate 9S-lipoxygenase3 Neighboring gene protein ETHYLENE-INSENSITIVE 2 Neighboring gene uncharacterized LOC103643856

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Loss of ZmLIPOXYGENASE4 Decreases Fusarium verticillioides Resistance in Maize Seedlings. Lanubile A, et al. Genes (Basel), 2021 Feb 25. PMID 33668883, Free PMC Article
    2. A role for 9-lipoxygenases in maize defense against insect herbivory. Woldemariam MG, et al. Plant Signal Behav, 2018 Jan 2. PMID 29293391, Free PMC Article
    3. Characterization of genetic diversity and linkage disequilibrium of ZmLOX4 and ZmLOX5 loci in maize. De La Fuente GN, et al. PLoS One, 2013. PMID 23365644, Free PMC Article
    4. Comparative molecular and biochemical characterization of segmentally duplicated 9-lipoxygenase genes ZmLOX4 and ZmLOX5 of maize. Park YS, et al. Planta, 2010 May. PMID 20349083
    5. Characterization of the maize lipoxygenase gene family in relation to aflatoxin accumulation resistance. Ogunola OF, et al. PLoS One, 2017. PMID 28715485, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Loss of ZmLIPOXYGENASE4 Decreases Fusarium verticillioides Resistance in Maize Seedlings.
      Title: Loss of ZmLIPOXYGENASE4 Decreases Fusarium verticillioides Resistance in Maize Seedlings.
    2. Cochliobolus heterostrophus infection induces the mRNA accumulation. Accumulation of 10-oxo-11-phytoenoic acid, 10-oxo-11-phytendieoic acid, and other carboxylic acids derived from them is observed. 10-oxo-11-phytenoic acid is a cytotoxic phytoalexin and induces other defense genes.
      Title: Maize death acids, 9-lipoxygenase-derived cyclopente(a)nones, display activity as cytotoxic phytoalexins and transcriptional mediators.
    3. Spodoptera exigua herbivory results in increased abundance of the mRNA. Uniform Mu insertion lead to better Spodoptera exigua growth the mutant plants.
      Title: A role for 9-lipoxygenases in maize defense against insect herbivory.
    4. Both ZmLOX4 and ZmLOX5 show little genetic diversity and low linkage disequilibrium, and have been under neutral selection.
      Title: Characterization of genetic diversity and linkage disequilibrium of ZmLOX4 and ZmLOX5 loci in maize.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    linoleate 9S-lipoxygenase4
    Names
    9-lipoxygenase
    lipoxygenase4
    NP_001105974.2
    XP_035816211.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112504.2 → NP_001105974.2  linoleate 9S-lipoxygenase4

      See identical proteins and their annotated locations for NP_001105974.2

      Status: VALIDATED

      Source sequence(s)
      BT064459, CABHLF010000012
      UniProtKB/TrEMBL
      A0A317Y5T6, A0A8J8YAR7, A1XCH9, C0P840
      Conserved Domains (1) summary
      PLN02337
      Location:5 → 887
      PLN02337; lipoxygenase

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      270833829..270849306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035960318.1 → XP_035816211.1  linoleate 9S-lipoxygenase4 isoform X1

      UniProtKB/TrEMBL
      A0A1D6L0K8, A0A1D6L0M2
      Conserved Domains (1) summary
      PLN02337
      Location:73 → 793
      PLN02337; lipoxygenase
    Nucleotide Protein
    Heading Accession and Version

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