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    LOC111170599 long-wave-sensitive opsin 1 [ Delphinapterus leucas (beluga whale) ]

    Gene ID: 111170599, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC111170599
    Gene description
    long-wave-sensitive opsin 1
    See related
    Ensembl:ENSDLEG00000010916
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Delphinapterus leucas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
    Also known as
    LWS; OPN1LW
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    Genomic context

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    See LOC111170599 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098148.1 (958286..969345)
    100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019161043.1 (958281..969341)

    NW_022098148.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 1 Neighboring gene methyl-CpG binding protein 2 Neighboring gene testis expressed 28 Neighboring gene transketolase like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    long-wave-sensitive opsin 1
    Names
    long-wavelength sensitive cone opsin
    opsin 1, long wave sensitive

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM228892v3 Primary Assembly

    Genomic

    1. NW_022098148.1 Reference ASM228892v3 Primary Assembly

      Range
      958286..969345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022565932.1 → XP_022421640.1  long-wave-sensitive opsin 1

      UniProtKB/TrEMBL
      A0A1L5JHN5
      Related
      ENSDLEP00000014889.1, ENSDLET00000016442.1
      Conserved Domains (2) summary
      cd14964
      Location:56 → 80
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:42 → 333
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
    Nucleotide Protein
    Heading Accession and Version

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