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    cald1 caldesmon 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100124848, updated on 25-Apr-2024

    Summary

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    Official Symbol
    cald1provided by Xenbase
    Official Full Name
    caldesmon 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-963931
    See related
    Ensembl:ENSXETG00000023618
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    CaD
    Orthologs
    human mouse all
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    Genomic context

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    See cald1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (18144222..18270055, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (10203358..10329444)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene sarcoglycan delta Neighboring gene hepatitis A virus cellular receptor 1 Neighboring gene uncharacterized LOC105946924 Neighboring gene bisphosphoglycerate mutase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables myosin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in synaptic vesicle endocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in synaptic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    caldesmon

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      18144222..18270055 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004912793.4 → XP_004912850.1  caldesmon isoform X1

      See identical proteins and their annotated locations for XP_004912850.1

      UniProtKB/TrEMBL
      A0A803J246, A0A803JX92
      Related
      ENSXETP00000112686.1, ENSXETT00000120927.1
      Conserved Domains (3) summary
      pfam02029
      Location:586 → 848
      Caldesmon; Caldesmon
      cd16269
      Location:376 → 387
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:322 → 402
      GBP_C; Guanylate-binding protein, C-terminal domain

    2. XM_004912794.3 → XP_004912851.1  caldesmon isoform X1

      See identical proteins and their annotated locations for XP_004912851.1

      UniProtKB/TrEMBL
      A0A803J246, A0A803JX92
      Conserved Domains (3) summary
      pfam02029
      Location:586 → 848
      Caldesmon; Caldesmon
      cd16269
      Location:376 → 387
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:322 → 402
      GBP_C; Guanylate-binding protein, C-terminal domain

    3. XM_004912797.4 → XP_004912854.1  caldesmon isoform X2

      UniProtKB/TrEMBL
      A0A803J246, A0A803JCE2
      Related
      ENSXETP00000105549.1, ENSXETT00000110511.1
      Conserved Domains (3) summary
      pfam02029
      Location:575 → 837
      Caldesmon; Caldesmon
      cd16269
      Location:365 → 376
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:311 → 391
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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