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    Cdyl chromodomain Y like [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101721111, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Cdyl
    Gene description
    chromodomain Y like
    See related
    Ensembl:ENSHGLG00000005262
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    See Cdyl in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624756.1 (20261150..20471697, complement)

    NW_004624756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110349790 Neighboring gene ribonuclease P/MRP subunit p40 Neighboring gene 60S ribosomal protein L6-like Neighboring gene coiled-coil domain-containing protein 47-like Neighboring gene uncharacterized LOC110349728

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624756 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain Y-like protein
    Names
    chromodomain protein, Y-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624756.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      20261150..20471697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021260721.1 → XP_021116380.1  chromodomain Y-like protein isoform X1

      UniProtKB/TrEMBL
      A0A0P6JTL4
      Conserved Domains (3) summary
      cd06558
      Location:313 → 509
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
      smart00298
      Location:31 → 83
      CHROMO; Chromatin organization modifier domain
      pfam04698
      Location:4 → 157
      Rab_eff_C; Rab effector MyRIP/melanophilin C-terminus

    2. XM_021260722.1 → XP_021116381.1  chromodomain Y-like protein isoform X1

      UniProtKB/TrEMBL
      A0A0P6JTL4
      Conserved Domains (3) summary
      cd06558
      Location:313 → 509
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
      smart00298
      Location:31 → 83
      CHROMO; Chromatin organization modifier domain
      pfam04698
      Location:4 → 157
      Rab_eff_C; Rab effector MyRIP/melanophilin C-terminus

    3. XM_004847754.3 → XP_004847811.1  chromodomain Y-like protein isoform X2

      UniProtKB/TrEMBL
      A0A0P6JTL4
      Related
      ENSHGLP00000007227.1, ENSHGLT00000007312.1
      Conserved Domains (3) summary
      cd06558
      Location:290 → 486
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
      smart00298
      Location:7 → 60
      CHROMO; Chromatin organization modifier domain
      pfam04698
      Location:4 → 134
      Rab_eff_C; Rab effector MyRIP/melanophilin C-terminus
    Nucleotide Protein
    Heading Accession and Version

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