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    TGME49_269980 preprotein translocase Sec61, putative [ Toxoplasma gondii ME49 ]

    Gene ID: 7894544, updated on 26-Oct-2024

    Summary

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    Gene symbol
    TGME49_269980
    Gene description
    preprotein translocase Sec61, putative
    Locus tag
    TGME49_269980
    See related
    ToxoDB:TGME49_269980; VEuPathDB:TGME49_269980
    Gene type
    protein coding
    RNA name
    preprotein translocase Sec61, putative
    RefSeq status
    PROVISIONAL
    Organism
    Toxoplasma gondii ME49 (strain: ME49)
    Lineage
    Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma
    Old locus tag
    TGME49_069980
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: VIII
    Exon count:
    8
    Sequence:
    Chromosome: VIII; NC_031476.1 (5483536..5489390, complement)

    Chromosome VIII - NC_031476.1Genomic Context describing neighboring genes Neighboring gene NAD dependent epimerase/dehydratase family protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene 14-3-3 superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_031476.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signal sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in post-translational protein targeting to membrane, translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Sec61 translocon complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    preprotein translocase Sec61, putative
    XP_002365676.1
    • encoded by transcript TGME49_269980
      Predicted trans-membrane domain (TMHMM2.0):33-56:75-98:118-141:145-168:243-266:285-308:412-435:438-456

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_031476.1 Reference assembly

      Range
      5483536..5489390 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002365635.1 → XP_002365676.1  preprotein translocase Sec61, putative [Toxoplasma gondii ME49]

      See identical proteins and their annotated locations for XP_002365676.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A086KHE1, A0A086L6L2, A0A086LCR7, A0A086LY40, A0A086Q085, A0A086QVS8, A0A0F7V280, A0A0N5EBF4, A0A125YSW3, A0A125YSW4, A0A139Y6H7, A0A151HNW2, A0A2G8Y1F6, A0A2T6IR56, A0A3R7YXC5, A0A7J6K6L5, B6KCV3, B9PHN7, B9Q5T4, S7WD47, S8GIS5
      Conserved Domains (1) summary
      PTZ00219
      Location:1 → 473
      PTZ00219; Sec61 alpha subunit; Provisional
    Nucleotide Protein
    Heading Accession and Version

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