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    Supt5h SPT5 homolog, DSIF elongation factor subunit [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

    Gene ID: 101958330, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Supt5h
    Gene description
    SPT5 homolog, DSIF elongation factor subunit
    Locus tag
    H1C71_039078
    See related
    EnsemblRapid:ENSSTOG00015016569
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictidomys tridecemlineatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
    Orthologs
    human mouse all
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    Genomic context

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    See Supt5h in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024409349.1 (13852258..13880016)
    102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936661.1 (2280390..2308085)

    NW_024409349.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology and RhoGEF domain containing G2 Neighboring gene ribosomal protein S16 Neighboring gene translocase of inner mitochondrial membrane 50 Neighboring gene delta like canonical Notch ligand 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DSIF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription elongation factor SPT5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HiC_Itri_2 Primary Assembly

    Genomic

    1. NW_024409349.1 Reference HiC_Itri_2 Primary Assembly

      Range
      13852258..13880016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005336418.4 → XP_005336475.1  transcription elongation factor SPT5 isoform X1

      UniProtKB/TrEMBL
      A0A287D7K2, I3MTF2
      Related
      ENSSTOP00015020354.1, ENSSTOT00015022282.1
      Conserved Domains (5) summary
      cd09888
      Location:178 → 265
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG5164
      Location:334 → 965
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:276 → 313
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06086
      Location:1028 → 1084
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam11942
      Location:93 → 172
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal

    2. XM_021733989.2 → XP_021589664.1  transcription elongation factor SPT5 isoform X2

      UniProtKB/TrEMBL
      I3MTF2
      Conserved Domains (5) summary
      cd09888
      Location:174 → 261
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG5164
      Location:330 → 961
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:272 → 309
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06086
      Location:1024 → 1080
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam11942
      Location:75 → 168
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
    Nucleotide Protein
    Heading Accession and Version

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