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    LOC102350852 SPATS2-like protein [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102350852, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC102350852
    Gene description
    SPATS2-like protein
    See related
    Ensembl:ENSLACG00000018167
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Also known as
    SPATS2L
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    Genomic context

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    See LOC102350852 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 9 NC_088147.1 (37976950..38079219, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819055.1 (2781188..2881039)

    Chromosome 9 - NC_088147.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 3 Neighboring gene BTB/POZ domain-containing protein KCTD18 Neighboring gene 5S ribosomal RNA Neighboring gene matrix AAA peptidase interacting protein 1 Neighboring gene tRNA-yW synthesizing protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SPATS2-like protein
    Names
    spermatogenesis associated serine rich 2 like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088147.1 Reference fLatCha1.pri

      Range
      37976950..38079219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014484778.2 → XP_014340264.1  SPATS2-like protein

      UniProtKB/TrEMBL
      H3BFK5
      Related
      ENSLACP00000020676.1
      Conserved Domains (1) summary
      pfam07139
      Location:60 → 359
      DUF1387; Protein of unknown function (DUF1387)

    2. XM_014484777.2 → XP_014340263.1  SPATS2-like protein

      UniProtKB/TrEMBL
      H3BFK5
      Conserved Domains (1) summary
      pfam07139
      Location:60 → 359
      DUF1387; Protein of unknown function (DUF1387)

    3. XM_005989524.3 → XP_005989586.1  SPATS2-like protein

      UniProtKB/TrEMBL
      H3BFK5
      Conserved Domains (1) summary
      pfam07139
      Location:60 → 359
      DUF1387; Protein of unknown function (DUF1387)

    4. XM_064563554.1 → XP_064419624.1  SPATS2-like protein

    Nucleotide Protein
    Heading Accession and Version

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