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    LOC102544096 interferon omega-1-like [ Vicugna pacos (alpaca) ]

    Gene ID: 102544096, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC102544096
    Gene description
    interferon omega-1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vicugna pacos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
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    Genomic context

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    See LOC102544096 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current VicPac3.1 (GCF_000164845.3) 4 Unlocalized Scaffold NW_021964161.1 (15260452..15261134)
    101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882907.1 (2910098..2914799, complement)

    NW_021964161.1Genomic Context describing neighboring genes Neighboring gene interferon alpha-1-like Neighboring gene interferon alpha-1-like Neighboring gene interferon epsilon Neighboring gene methylthioadenosine phosphorylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytokine activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables type I interferon receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in B cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in B cell proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in T cell activation involved in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in humoral immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in natural killer cell activation involved in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of peptidyl-serine phosphorylation of STAT protein IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to exogenous dsRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon omega-1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VicPac3.1 Primary Assembly

    Genomic

    1. NW_021964161.1 Reference VicPac3.1 Primary Assembly

      Range
      15260452..15261134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006215134.3 → XP_006215196.1  interferon omega-1-like

      UniProtKB/TrEMBL
      A0A6I9ILG2
      Conserved Domains (1) summary
      pfam00143
      Location:26 → 185
      Interferon; Interferon alpha/beta domain
    Nucleotide Protein
    Heading Accession and Version

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