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    APOA1 apolipoprotein A1 [ Ailuropoda melanoleuca (giant panda) ]

    Gene ID: 100477643, updated on 8-Mar-2024

    Summary

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    Gene symbol
    APOA1
    Gene description
    apolipoprotein A1
    Locus tag
    PANDA_008176
    See related
    Ensembl:ENSAMEG00000008662
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ailuropoda melanoleuca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
    Also known as
    Apo-AI; ApoA-I
    Orthologs
    human mouse all
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    Genomic context

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    See APOA1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current ASM200744v2 (GCF_002007445.1) 8 NC_048225.1 (12889762..12900365, complement)
    102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217627.1 (751742..754967)

    Chromosome 8 - NC_048225.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein A4 Neighboring gene apolipoprotein C3 Neighboring gene SIK family kinase 3 Neighboring gene uncharacterized LOC117803315 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables high-density lipoprotein particle receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipoprotein metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apolipoprotein A-I

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM200744v2 Primary Assembly

    Genomic

    1. NC_048225.1 Reference ASM200744v2 Primary Assembly

      Range
      12889762..12900365 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034665813.1 → XP_034521704.1  apolipoprotein A-I isoform X2

      UniProtKB/Swiss-Prot
      D2HC77

    2. XM_034665812.1 → XP_034521703.1  apolipoprotein A-I isoform X1

      UniProtKB/Swiss-Prot
      D2HC77
      Related
      ENSAMEP00000040924.1, ENSAMET00000035218.1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D2HC77.1 GenPept UniProtKB/Swiss-Prot:D2HC77

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