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    LOC110488345 antigen peptide transporter 2 [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 110488345, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC110488345
    Gene description
    antigen peptide transporter 2
    See related
    Ensembl:ENSOMYG00000024096
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Also known as
    ABCB3B(b)
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    Genomic context

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    See LOC110488345 in Genome Data Viewer
    Location:
    chromosome: 32
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 32 NC_050572.1 (33337177..33343886, complement)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (28526253..28532749, complement)

    Chromosome 32 - NC_050572.1Genomic Context describing neighboring genes Neighboring gene hydroxysteroid (17-beta) dehydrogenase 8 Neighboring gene bromodomain containing 2a Neighboring gene proteasome 20S subunit beta 9a Neighboring gene proteasome 20S subunit beta 12 Neighboring gene proteasome 20S subunit beta 13a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type oligopeptide transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    antigen peptide transporter 2
    Names
    sub-family B ATP-binding cassette transporter 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_050572.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      33337177..33343886 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021560565.2 → XP_021416240.2  antigen peptide transporter 2

      UniProtKB/TrEMBL
      Q5FBT2
      Related
      ENSOMYP00000052754.2, ENSOMYT00000057378.2
      Conserved Domains (1) summary
      TIGR00958
      Location:33 → 712
      3a01208; Conjugate Transporter-2 (CT2) Family protein
    Nucleotide Protein
    Heading Accession and Version

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