NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001107490.4 → NP_001100960.2 protein capicua homolog 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) represents use of an alternate promoter, lacks two exons in the 5' region, and therefore differs in the 5' UTR and 5' coding region, compared to variant 1. These differences cause translation initiation at a downstream start codon and result in an isoform (2) with a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AI029769, JAXUCZ010000001
- Conserved Domains (5) summary
-
- PHA03247
Location:732 → 1288
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:156 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK07003
Location:646 → 788
- PRK07003; DNA polymerase III subunit gamma/tau
- PRK07764
Location:45 → 151
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
NM_001372079.1 → NP_001359008.1 protein capicua homolog 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AI029769, JAXUCZ010000001
- UniProtKB/TrEMBL
-
A0A8I6APH0
- Related
- ENSRNOP00000094181.1, ENSRNOT00000101741.2
- Conserved Domains (5) summary
-
- PHA03247
Location:1638 → 2180
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:1077 → 1221
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK07003
Location:1552 → 1694
- PRK07003; DNA polymerase III subunit gamma/tau
- cd01388
Location:1105 → 1176
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam16090
Location:252 → 346
- DUF4819; Domain of unknown function (DUF4819)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCr8
Genomic
-
NC_086019.1 Reference GRCr8
- Range
-
89980660..90008357
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_008758933.4 → XP_008757155.1 protein capicua homolog isoform X1
See identical proteins and their annotated locations for XP_008757155.1
- UniProtKB/TrEMBL
-
A0A8I6APH0
- Conserved Domains (5) summary
-
- PHA03247
Location:1638 → 2180
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:1077 → 1221
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK07003
Location:1552 → 1694
- PRK07003; DNA polymerase III subunit gamma/tau
- cd01388
Location:1105 → 1176
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam16090
Location:252 → 346
- DUF4819; Domain of unknown function (DUF4819)
-
XM_008758936.4 → XP_008757158.1 protein capicua homolog isoform X2
- Conserved Domains (3) summary
-
- COG5648
Location:1077 → 1221
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:1105 → 1176
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam16090
Location:252 → 343
- DUF4819; Domain of unknown function (DUF4819)
-
XM_008758937.4 → XP_008757159.1 protein capicua homolog isoform X3
- Conserved Domains (3) summary
-
- COG5648
Location:1077 → 1221
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:1105 → 1176
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam16090
Location:252 → 343
- DUF4819; Domain of unknown function (DUF4819)
-
XM_063261360.1 → XP_063117430.1 protein capicua homolog isoform X6
-
XM_008758935.4 → XP_008757157.1 protein capicua homolog isoform X4
- Conserved Domains (3) summary
-
- COG5648
Location:1077 → 1221
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:1105 → 1176
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
- pfam16090
Location:252 → 343
- DUF4819; Domain of unknown function (DUF4819)
-
XM_063261359.1 → XP_063117429.1 protein capicua homolog isoform X5
-
XM_063261361.1 → XP_063117431.1 protein capicua homolog isoform X7
-
XM_017590018.3 → XP_017445507.1 protein capicua homolog isoform X8
-
XM_039111447.2 → XP_038967375.1 protein capicua homolog isoform X14
- Conserved Domains (5) summary
-
- PHA03247
Location:721 → 1263
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:145 → 304
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK07003
Location:635 → 777
- PRK07003; DNA polymerase III subunit gamma/tau
- PRK07764
Location:7 → 140
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd01388
Location:188 → 259
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
XM_039111415.2 → XP_038967343.1 protein capicua homolog isoform X11
- Conserved Domains (5) summary
-
- PHA03247
Location:732 → 1290
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:156 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK07003
Location:646 → 788
- PRK07003; DNA polymerase III subunit gamma/tau
- PRK07764
Location:45 → 151
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
XM_039111425.2 → XP_038967353.1 protein capicua homolog isoform X12
- Conserved Domains (5) summary
-
- PHA03247
Location:732 → 1289
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:156 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK07003
Location:646 → 788
- PRK07003; DNA polymerase III subunit gamma/tau
- PRK07764
Location:45 → 151
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
XM_039111436.2 → XP_038967364.1 protein capicua homolog isoform X13
- Conserved Domains (5) summary
-
- PHA03247
Location:732 → 1288
- PHA03247; large tegument protein UL36; Provisional
- COG5648
Location:156 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- PRK07003
Location:646 → 788
- PRK07003; DNA polymerase III subunit gamma/tau
- PRK07764
Location:45 → 151
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
XM_008758938.4 → XP_008757160.1 protein capicua homolog isoform X9
- UniProtKB/TrEMBL
-
D4A853
- Related
- ENSRNOP00000073956.2, ENSRNOT00000091357.3
- Conserved Domains (2) summary
-
- COG5648
Location:156 → 315
- NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
- cd01388
Location:199 → 270
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
-
XM_063261362.1 → XP_063117432.1 protein capicua homolog isoform X10