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    EHI_081410 40S ribosomal protein SA, putative [ Entamoeba histolytica HM-1:IMSS ]

    Gene ID: 3401908, updated on 17-May-2024

    Summary

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    Gene symbol
    EHI_081410
    Gene description
    40S ribosomal protein SA, putative
    Locus tag
    EHI_081410
    See related
    AmoebaDB:EHI_081410; VEuPathDB:EHI_081410
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Entamoeba histolytica HM-1:IMSS (strain: HM-1:IMSS)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
    Old locus tag
    878.t00001
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    Genomic context

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    See EHI_081410 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_001914990.1Genomic Context describing neighboring genes Neighboring gene WD domain containing protein Neighboring gene AP-2 complex protein, putative Neighboring gene Sec6 protein, putative Neighboring gene adenylylcyclase-associated protein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001914990.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the protist parasite Entamoeba histolytica. Loftus B, et al. Nature, 2005 Feb 24. PMID 15729342
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein SA, putative
    XP_647879.1
    • encoded by transcript EHI_081410A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001914990.1 Reference assembly

      Range
      31418..32210 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_642787.2 → XP_647879.1  40S ribosomal protein SA, putative [Entamoeba histolytica HM-1:IMSS]

      See identical proteins and their annotated locations for XP_647879.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A060N1C5, A0A060N442, A0A060N670, A0A175JTC3, A0A5K1TWH2, C4M5A0, M2PZV0, M3UIS1, M7WC59, N9TMM3, S0AYT9, S0AZN9, S0B0K0
      Conserved Domains (2) summary
      PTZ00254
      Location:6 → 254
      PTZ00254; 40S ribosomal protein SA; Provisional
      cl00315
      Location:18 → 213
      RPS2; Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ...
    Nucleotide Protein
    Heading Accession and Version

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