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    PPTG_05296 hypothetical protein [ Phytophthora parasitica INRA-310 ]

    Gene ID: 20175350, updated on 17-May-2024

    Summary

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    Gene symbol
    PPTG_05296
    Gene description
    hypothetical protein
    Locus tag
    PPTG_05296
    See related
    FungiDB:PPTG_05296; VEuPathDB:PPTG_05296
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Phytophthora parasitica INRA-310 (strain: INRA-310)
    Lineage
    Eukaryota; Stramenopiles; Oomycetes; Peronosporales; Phytophthora
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    Genomic context

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    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_008648993.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008648993.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_008648993.1 Reference assembly

      Range
      875329..883499 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008898814.1 → XP_008897062.1  hypothetical protein PPTG_05296 [Phytophthora parasitica INRA-310]

      See identical proteins and their annotated locations for XP_008897062.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      W2K7T5, W2MFP5, W2QX43
      Conserved Domains (9) summary
      smart00547
      Location:1110 → 1133
      ZnF_RBZ; Zinc finger domain
      cd02257
      Location:2379 → 2561
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      cl02553
      Location:1411 → 1555
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      sd00025
      Location:1057 → 1076
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      sd00029
      Location:363 → 382
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:363 → 387
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam02207
      Location:972 → 1036
      zf-UBR; Putative zinc finger in N-recognin (UBR box)
      pfam10240
      Location:1654 → 1728
      DUF2464; Protein of unknown function (DUF2464)
      pfam13385
      Location:476 → 626
      Laminin_G_3; Concanavalin A-like lectin/glucanases superfamily
    Nucleotide Protein
    Heading Accession and Version

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