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    SIAH1 siah E3 ubiquitin protein ligase 1 [ Acanthisitta chloris (rifleman) ]

    Gene ID: 103804687, updated on 3-Aug-2024

    Summary

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    Gene symbol
    SIAH1
    Gene description
    siah E3 ubiquitin protein ligase 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthisitta chloris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Acanthisittidae; Acanthisitta
    Orthologs
    human mouse all
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    Genomic context

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    See SIAH1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current ASM69581v1 (GCF_000695815.1) Unplaced Scaffold NW_008679506.1 (16292..17678)

    NW_008679506.1Genomic Context describing neighboring genes Neighboring gene lon peptidase 2, peroxisomal

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008679506.1 Unplaced Scaffold Reference ASM69581v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase SIAH1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acanthisitta chloris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM69581v1

    Genomic

    1. NW_008679506.1 Reference ASM69581v1

      Range
      16292..17678
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009077299.1 → XP_009075547.1  E3 ubiquitin-protein ligase SIAH1

      See identical proteins and their annotated locations for XP_009075547.1

      UniProtKB/TrEMBL
      A0A091N1E5
      Conserved Domains (2) summary
      cd16751
      Location:39 → 78
      RING-HC_SIAH1; RING finger, HC subclass, found in seven in absentia homolog 1 (SIAH1) and similar proteins
      pfam03145
      Location:82 → 278
      Sina; Seven in absentia protein family
    Nucleotide Protein
    Heading Accession and Version

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