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    SRAE_1000263400 Endoribonuclease Dicer [ Strongyloides ratti ]

    Gene ID: 36376745, updated on 21-Dec-2023

    Summary

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    Gene symbol
    SRAE_1000263400
    Gene description
    Endoribonuclease Dicer
    Locus tag
    SRAE_1000263400
    Gene type
    protein coding
    RNA name
    Endoribonuclease Dicer
    RefSeq status
    PROVISIONAL
    Organism
    Strongyloides ratti (strain: ED321 Heterogonic)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Panagrolaimoidea; Strongyloididae; Strongyloides
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    Genomic context

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    See SRAE_1000263400 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_037307.1 (8454500..8460101)

    Chromosome 1 - NC_037307.1Genomic Context describing neighboring genes Neighboring gene Tubulin-specific chaperone C Neighboring gene 60S ribosomal protein L6 Neighboring gene Condensin-2 complex subunit D3 Neighboring gene Protein-tyrosine phosphatase, receptor/non-receptor type domain and Protein-tyrosine/Dual specificity phosphatase domain and Protein-tyrosine phosphatase, catalytic domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037307.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables deoxyribonuclease I activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonuclease III activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in apoptotic DNA fragmentation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pre-miRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in siRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RISC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Endoribonuclease Dicer

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037307.1 Reference assembly

      Range
      8454500..8460101
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024649734.1 → XP_024503581.1  Endoribonuclease Dicer [Strongyloides ratti]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A090LA41
      Conserved Domains (6) summary
      smart00535
      Location:1312 → 1406
      RIBOc; Ribonuclease III family
      smart00358
      Location:1743 → 1806
      DSRM; Double-stranded RNA binding motif
      cd00593
      Location:1571 → 1740
      RIBOc; RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in ...
      pfam03368
      Location:592 → 682
      Dicer_dimer; Dicer dimerisation domain
      cl00301
      Location:859 → 970
      PAZ; PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a ...
      cl17041
      Location:8 → 525
      helicase_insert_domain; helicase_insert_domain
    Nucleotide Protein
    Heading Accession and Version

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