U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    J056_000360 Negative cofactor 2 complex subunit beta [ Wallemia ichthyophaga EXF-994 ]

    Gene ID: 20373312, updated on 23-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    J056_000360
    Gene description
    Negative cofactor 2 complex subunit beta
    Locus tag
    J056_000360
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Wallemia ichthyophaga EXF-994 (strain: EXF-994, type-material: culture from neotype of Wallemia ichthyophaga)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Wallemiomycotina; Wallemiomycetes; Wallemiales; Wallemiaceae; Wallemia
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See J056_000360 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_008806274.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene putative small nuclear ribonucleoprotein F Neighboring gene FHA domain-containing protein DDL Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_008806274.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables core promoter sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of negative cofactor 2 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Negative cofactor 2 complex subunit beta

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_008806274.1 Reference assembly

      Range
      789954..790462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009267758.1 → XP_009266033.1  Negative cofactor 2 complex subunit beta [Wallemia ichthyophaga EXF-994]

      See identical proteins and their annotated locations for XP_009266033.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A4T0KEU8, R9ASG1
      Conserved Domains (1) summary
      cl23735
      Location:15 → 150
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases