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    ADAR adenosine deaminase RNA specific [ Aptenodytes forsteri (emperor penguin) ]

    Gene ID: 103905523, updated on 3-Aug-2024

    Summary

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    Gene symbol
    ADAR
    Gene description
    adenosine deaminase RNA specific
    Locus tag
    AS27_13098
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aptenodytes forsteri
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
    Orthologs
    human mouse all
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    Genomic context

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    See ADAR in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008796119.1 (29765..42403, complement)

    NW_008796119.1Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 Q1 Neighboring gene cholinergic receptor nicotinic beta 2 subunit Neighboring gene uncharacterized LOC103905524 Neighboring gene potassium calcium-activated channel subfamily N member 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008796119.1 Unplaced Scaffold Reference ASM69914v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded RNA adenosine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA-specific adenosine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adenosine to inosine editing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    double-stranded RNA-specific adenosine deaminase
    Names
    Double-stranded RNA-specific adenosine deaminase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM69914v1

    Genomic

    1. NW_008796119.1 Reference ASM69914v1

      Range
      29765..42403 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009287205.2 → XP_009285480.1  double-stranded RNA-specific adenosine deaminase

      UniProtKB/TrEMBL
      A0A087RHD6
      Conserved Domains (3) summary
      smart00358
      Location:568 → 633
      DSRM; Double-stranded RNA binding motif
      smart00552
      Location:779 → 1165
      ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
      cl02659
      Location:137 → 198
      z-alpha; Adenosine deaminase z-alpha domain
    Nucleotide Protein
    Heading Accession and Version

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