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    LOC100183638 uncharacterized LOC100183638 [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 100183638, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC100183638
    Gene description
    uncharacterized LOC100183638
    See related
    Ensembl:ENSCING00000009003
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See LOC100183638 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 4 NC_020169.2 (514051..526368, complement)

    Chromosome 4 - NC_020169.2Genomic Context describing neighboring genes Neighboring gene zinc finger (C2H2)-99 Neighboring gene chondroitin sulfate synthase 1 Neighboring gene regulator of microtubule dynamics protein 3 Neighboring gene uncharacterized LOC113474213 Neighboring gene YEATS domain-containing protein 4 Neighboring gene uncharacterized LOC778983

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020169.2 Chromosome 4 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
    2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in clathrin-dependent endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-2 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100183638
    Names
    stonin-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020169.2 Reference KH Primary Assembly

      Range
      514051..526368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002122656.4 → XP_002122692.2  uncharacterized protein LOC100183638

      UniProtKB/TrEMBL
      A0A1W2W6P1
      Conserved Domains (1) summary
      cd09255
      Location:999 → 1323
      AP-like_stonins_MHD; Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins
    Nucleotide Protein
    Heading Accession and Version

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