U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC100183933 AN1-type zinc finger protein 5 [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 100183933, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100183933
    Gene description
    AN1-type zinc finger protein 5
    See related
    Ensembl:ENSCING00000004420
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100183933 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004191388.1 (19185..27225, complement)

    NW_004191388.1Genomic Context describing neighboring genes Neighboring gene DNA repair protein XRCC4-like Neighboring gene WD repeat-containing protein 38 Neighboring gene microRNA mir-4107 Neighboring gene 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial-like Neighboring gene lysosomal protective protein Neighboring gene uncharacterized LOC113475586

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_004191388 Unplaced Scaffold Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    AN1-type zinc finger protein 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NW_004191388.1 Reference KH Primary Assembly

      Range
      19185..27225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002129848.5 → XP_002129884.2  AN1-type zinc finger protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A1W2WF85
      Related
      ENSCINP00000009130
      Conserved Domains (2) summary
      smart00154
      Location:174 → 211
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:39 → 63
      zf-A20; A20-like zinc finger

    2. XM_009862333.3 → XP_009860635.1  AN1-type zinc finger protein 5 isoform X2

      See identical proteins and their annotated locations for XP_009860635.1

      UniProtKB/TrEMBL
      A0A1W3JM62, F6Y4L7
      Conserved Domains (2) summary
      smart00154
      Location:146 → 183
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:11 → 35
      zf-A20; A20-like zinc finger
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials