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    Tc00.1047053507089.80 exosome-associated protein 2, putative [ Trypanosoma cruzi ]

    Gene ID: 3551107, updated on 11-Apr-2024

    Summary

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    Gene symbol
    Tc00.1047053507089.80
    Gene description
    exosome-associated protein 2, putative
    Locus tag
    Tc00.1047053507089.80
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Trypanosoma cruzi (strain: CL Brener)
    Lineage
    Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
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    Genomic context

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    See Tc00.1047053507089.80 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_001849562.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene RNA-binding protein, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001849562.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
    2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    • heterozygous, Esmeraldo-like haplotype
      allele of Tc00.1047053504085.20

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in TRAMP-dependent tRNA surveillance pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in U1 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in U4 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in U5 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear mRNA surveillance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exosome-associated protein 2, putative
    XP_818776.1
    • EAP2: pers. comm. C. Clayton, University of Heidelberg
      heterozygous, Esmeraldo-like haplotype
      allele of Tc00.1047053504085.20

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001849562.1 Reference assembly

      Range
      136686..137522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_813683.1 → XP_818776.1  exosome-associated protein 2, putative [Trypanosoma cruzi]

      See identical proteins and their annotated locations for XP_818776.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2V2VI66, A0A2V2WQJ0, Q4DWN5, V5B5R5
      Conserved Domains (1) summary
      COG2123
      Location:16 → 276
      Rrp42; Exosome complex RNA-binding protein Rrp42, RNase PH superfamily [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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