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    Tc00.1047053503525.50 RNA helicase, putative [ Trypanosoma cruzi ]

    Gene ID: 3536616, updated on 23-Nov-2023

    Summary

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    Gene symbol
    Tc00.1047053503525.50
    Gene description
    RNA helicase, putative
    Locus tag
    Tc00.1047053503525.50
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Trypanosoma cruzi (strain: CL Brener)
    Lineage
    Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
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    Genomic context

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    See Tc00.1047053503525.50 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_001849514.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene pre-mRNA splicing factor ATP-dependent RNA helicase, putative Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001849514.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
    2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    • heterozygous, Esmeraldo-like haplotype
      allele of Tc00.1047053507825.20
      gene split across contig boundaries, should be merged with Tc00.1047053504179.9

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA helicase, putative
    XP_806581.1
    • possible pre-mRNA splicing factor
      heterozygous, Esmeraldo-like haplotype
      allele of Tc00.1047053507825.20
      gene split across contig boundaries, should be merged with Tc00.1047053504179.9

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001849514.1 Reference assembly

      Range
      87793..88404 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_801488.1 → XP_806581.1  RNA helicase, putative, partial [Trypanosoma cruzi]

      See identical proteins and their annotated locations for XP_806581.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q4CWS4
      Conserved Domains (1) summary
      pfam07717
      Location:114 → 192
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    Nucleotide Protein
    Heading Accession and Version

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