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    LOC104729520 vam6/Vps39-like protein [ Camelina sativa (false flax) ]

    Gene ID: 104729520, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC104729520
    Gene description
    vam6/Vps39-like protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camelina sativa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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    Genomic context

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    See LOC104729520 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Cs (GCF_000633955.1) 12 NC_025696.1 (1830507..1835733)

    Chromosome 12 - NC_025696.1Genomic Context describing neighboring genes Neighboring gene random slug protein 5-like Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene GATA transcription factor 19-like Neighboring gene epoxide hydrolase 4-like Neighboring gene embryonic protein DC-8-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_025696.1 Chromosome 12 Reference Cs

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing. Liang C, et al. BMC Genomics, 2013 Mar 5. PMID 23496985, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vam6/Vps39-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cs

    Genomic

    1. NC_025696.1 Reference Cs

      Range
      1830507..1835733
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010448467.2 → XP_010446769.1  vam6/Vps39-like protein

      Conserved Domains (5) summary
      pfam00637
      Location:632 → 760
      Clathrin; Region in Clathrin and VPS
      pfam10366
      Location:502 → 612
      Vps39_1; Vacuolar sorting protein 39 domain 1
      pfam10367
      Location:875 → 984
      Vps39_2; Vacuolar sorting protein 39 domain 2
      pfam14727
      Location:15 → 86
      PHTB1_N; PTHB1 N-terminus
      cl02434
      Location:69 → 273
      CNH; CNH domain
    Nucleotide Protein
    Heading Accession and Version

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