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    LOC100260874 protein CELLULOSE SYNTHASE INTERACTIVE 3 [ Vitis vinifera (wine grape) ]

    Gene ID: 100260874, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100260874
    Gene description
    protein CELLULOSE SYNTHASE INTERACTIVE 3
    Locus tag
    VIT_00008840001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100260874 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (2685748..2698883)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (2662804..2675918)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132253256 Neighboring gene NAC domain-containing protein 2 Neighboring gene replication factor C subunit 3 Neighboring gene kinesin-like protein KIN-7C, mitochondrial Neighboring gene aspartic proteinase Asp1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anisotropic cell growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cellulose synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CELLULOSE SYNTHASE INTERACTIVE 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      2685748..2698883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002285833.5 → XP_002285869.2  protein CELLULOSE SYNTHASE INTERACTIVE 3

      UniProtKB/TrEMBL
      A0A438K457, F6H0K3
      Conserved Domains (4) summary
      PLN03200
      Location:29 → 2133
      PLN03200; cellulose synthase-interactive protein; Provisional
      cd00020
      Location:488 → 587
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam00168
      Location:2011 → 2111
      C2; C2 domain
      sd00043
      Location:509 → 545
      ARM; armadillo repeat [structural motif]

    2. XM_010665891.3 → XP_010664193.1  protein CELLULOSE SYNTHASE INTERACTIVE 3

      UniProtKB/TrEMBL
      A0A438K457, F6H0K3
      Conserved Domains (4) summary
      PLN03200
      Location:29 → 2133
      PLN03200; cellulose synthase-interactive protein; Provisional
      cd00020
      Location:488 → 587
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam00168
      Location:2011 → 2111
      C2; C2 domain
      sd00043
      Location:509 → 545
      ARM; armadillo repeat [structural motif]

    3. XM_010665890.3 → XP_010664192.1  protein CELLULOSE SYNTHASE INTERACTIVE 3

      UniProtKB/TrEMBL
      A0A438K457, F6H0K3
      Conserved Domains (4) summary
      PLN03200
      Location:29 → 2133
      PLN03200; cellulose synthase-interactive protein; Provisional
      cd00020
      Location:488 → 587
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam00168
      Location:2011 → 2111
      C2; C2 domain
      sd00043
      Location:509 → 545
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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