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    PPOX protoporphyrinogen oxidase [ Ochotona princeps (American pika) ]

    Gene ID: 101536345, updated on 8-Mar-2024

    Summary

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    Gene symbol
    PPOX
    Gene description
    protoporphyrinogen oxidase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ochotona princeps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
    Orthologs
    human mouse all
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    Genomic context

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    See PPOX in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 2 NC_080833.1 (114862433..114865790)
    102 previous assembly OchPri4.0 (GCF_014633375.1) 13 NC_050548.1 (120698157..120701355)

    Chromosome 2 - NC_080833.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-fold modifier conjugating enzyme 1 Neighboring gene ubiquitin specific peptidase 21 Neighboring gene beta-1,4-galactosyltransferase 3 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxygen-dependent protoporphyrinogen oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heme biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protoporphyrinogen oxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOchPri1.hap1

    Genomic

    1. NC_080833.1 Reference mOchPri1.hap1

      Range
      114862433..114865790
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_058660528.1 → XP_058516511.1  protoporphyrinogen oxidase isoform X1

    2. XM_036494360.2 → XP_036350253.2  protoporphyrinogen oxidase isoform X2

    3. XM_058660530.1 → XP_058516513.1  protoporphyrinogen oxidase isoform X2

    Nucleotide Protein
    Heading Accession and Version

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