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    RPS11 ribosomal protein S11 [ Ailuropoda melanoleuca (giant panda) ]

    Gene ID: 100471926, updated on 8-Mar-2024

    Summary

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    Gene symbol
    RPS11
    Gene description
    ribosomal protein S11
    Locus tag
    PANDA_006272
    See related
    Ensembl:ENSAMEG00000014020
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ailuropoda melanoleuca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
    Orthologs
    human mouse all
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    Genomic context

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    See RPS11 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current ASM200744v2 (GCF_002007445.1) 12 NC_048229.1 (30628684..30630862, complement)
    102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217517.1 (881131..883316, complement)

    Chromosome 12 - NC_048229.1Genomic Context describing neighboring genes Neighboring gene Fc gamma receptor and transporter Neighboring gene uncharacterized LOC117795234 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD34 Neighboring gene ribosomal protein L13a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS17
    Names
    40S ribosomal protein S11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304884.1 → NP_001291813.1  small ribosomal subunit protein uS17

      See identical proteins and their annotated locations for NP_001291813.1

      Status: PROVISIONAL

      Source sequence(s)
      GU445332
      UniProtKB/TrEMBL
      D2H7V6, D3YC01, G1MP29
      Related
      ENSAMEP00000014778.1, ENSAMET00000015388.2
      Conserved Domains (1) summary
      PTZ00241
      Location:1 → 158
      PTZ00241; 40S ribosomal protein S11; Provisional

    RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM200744v2 Primary Assembly

    Genomic

    1. NC_048229.1 Reference ASM200744v2 Primary Assembly

      Range
      30628684..30630862 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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