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    SUMO1 small ubiquitin like modifier 1 [ Bos taurus (cattle) ]

    Gene ID: 614967, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SUMO1provided by VGNC
    Official Full Name
    small ubiquitin like modifier 1provided by VGNC
    Primary source
    VGNC:VGNC:35473
    See related
    BGD:BT28877
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SUMO1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (90738597..90764593, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 7 Neighboring gene KIAA2012 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene small nucleolar RNA SNORD70 Neighboring gene small nucleolar RNA SNORD70 Neighboring gene NOP58 ribonucleoprotein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Small ubiquitin-related modifier-1 modification mediates resolution of CREB-dependent responses to hypoxia. Comerford KM, et al. Proc Natl Acad Sci U S A, 2003 Feb 4. PMID 12552083, Free PMC Article
    2. Spartin recruits PKC-ζ via the PKC-ζ-interacting proteins ZIP1 and ZIP3 to lipid droplets. Urbanczyk A, et al. J Neurochem, 2011 Sep. PMID 21707618
    3. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    4. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC128420

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein sumoylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in PML body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ubiquitin-related modifier 1
    Names
    SMT3 suppressor of mif two 3 homolog 1
    SUMO-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035458.1 → NP_001030535.1  small ubiquitin-related modifier 1

      See identical proteins and their annotated locations for NP_001030535.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020989
      UniProtKB/Swiss-Prot
      Q3ZC68, Q5E9D1
      Conserved Domains (1) summary
      cd16114
      Location:21 → 96
      Ubl_SUMO1; ubiquitin-like (Ubl) domain found in small ubiquitin-related modifier 1 (SUMO-1) and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      90738597..90764593 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5E9D1.1 GenPept UniProtKB/Swiss-Prot:Q5E9D1

    Gene LinkOut

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