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    Iswi Imitation SWI [ Megachile rotundata (alfalfa leafcutting bee) ]

    Gene ID: 100879945, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Iswi
    Gene description
    Imitation SWI
    See related
    EnsemblRapid:LOC100879945
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Megachile rotundata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See Iswi in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003803313.1 (10777..15188, complement)

    NW_003803313.1Genomic Context describing neighboring genes Neighboring gene protein tramtrack Neighboring gene CUE domain-containing protein 2-A Neighboring gene uncharacterized LOC100880059 Neighboring gene N-acetylglucosamine-1-phosphate transferase subunits alpha and beta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003803313.1 Unplaced Scaffold Reference MROT_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromatin-remodeling complex ATPase chain Iswi

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Megachile rotundata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MROT_1.0

    Genomic

    1. NW_003803313.1 Reference MROT_1.0

      Range
      10777..15188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012298223.1 → XP_012153613.1  chromatin-remodeling complex ATPase chain Iswi isoform X2

      Related
      XP_012153613.1, XM_012298223.1
      Conserved Domains (6) summary
      PLN03142
      Location:43 → 1007
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd00046
      Location:151 → 290
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00167
      Location:798 → 837
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam00271
      Location:433 → 548
      Helicase_C; Helicase conserved C-terminal domain
      pfam09110
      Location:696 → 795
      HAND; HAND
      pfam09111
      Location:852 → 964
      SLIDE; SLIDE

    2. XM_003708634.2 → XP_003708682.2  chromatin-remodeling complex ATPase chain Iswi isoform X1

      Related
      XP_003708682.2, XM_003708634.2
      Conserved Domains (6) summary
      PLN03142
      Location:53 → 1019
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd00046
      Location:161 → 300
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00167
      Location:808 → 847
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam00271
      Location:443 → 558
      Helicase_C; Helicase conserved C-terminal domain
      pfam09110
      Location:706 → 805
      HAND; HAND
      pfam09111
      Location:862 → 974
      SLIDE; SLIDE
    Nucleotide Protein
    Heading Accession and Version

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