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    LOC101289821 somatotropin [ Orcinus orca (killer whale) ]

    Gene ID: 101289821, updated on 2-Nov-2023

    Summary

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    Gene symbol
    LOC101289821
    Gene description
    somatotropin
    See related
    EnsemblRapid:ENSOORG00010019746
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Orcinus orca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
    Also known as
    GH1
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    Genomic context

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    See LOC101289821 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 19 NC_064577.1 (36050581..36058400)

    Chromosome 19 - NC_064577.1Genomic Context describing neighboring genes Neighboring gene sodium voltage-gated channel alpha subunit 4 Neighboring gene uncharacterized LOC117203586 Neighboring gene CD79b molecule Neighboring gene intercellular adhesion molecule 5 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064577.1 Chromosome 19 Reference mOrcOrc1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables growth hormone receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hormone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in animal organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in growth hormone receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of receptor signaling pathway via JAK-STAT IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of tyrosine phosphorylation of STAT protein IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to nutrient levels IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    somatotropin
    Names
    growth hormone 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOrcOrc1.1 Primary Assembly

    Genomic

    1. NC_064577.1 Reference mOrcOrc1.1 Primary Assembly

      Range
      36050581..36058400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004275639.4 → XP_004275687.2  somatotropin

      Related
      ENSOORP00010026150.1, ENSOORT00010029620.1
      Conserved Domains (1) summary
      cd10285
      Location:81 → 260
      somatotropin_like; Somatotropin or growth hormone (GH), placental lactogen, and related pituitary gland hormones
    Nucleotide Protein
    Heading Accession and Version

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