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    CCT6 chaperonin containing TCP1 subunit 6 [ Musca domestica (house fly) ]

    Gene ID: 101899826, updated on 22-Jun-2024

    Summary

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    Gene symbol
    CCT6
    Gene description
    chaperonin containing TCP1 subunit 6
    See related
    VectorBase:MDOMA2_007430
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Musca domestica
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Musca
    Also known as
    CCT-zeta
    Orthologs
    fruit fly all
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    Genomic context

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    See CCT6 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_08 current Musca_domestica.polishedcontigs.V.1.1 (GCF_030504385.1) Unplaced Scaffold NW_026712172.1 (9958531..9962467)
    102 previous assembly Musca_domestica-2.0.2 (GCF_000371365.1) Unplaced Scaffold NW_004767539.1 (26554..30490, complement)

    NW_026712172.1Genomic Context describing neighboring genes Neighboring gene CDP-diacylglycerol--inositol 3-phosphatidyltransferase Neighboring gene uncharacterized LOC131800839 Neighboring gene mitochondrial inner membrane protease subunit 1 Neighboring gene Huntingtin-associated protein 40 kDa Neighboring gene large subunit GTPase 1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and Expression Pattern Analysis of the T-Complex Protein-1 Zeta Subunit in Musca domestica L (Diptera). Zhao X, et al. J Insect Sci, 2017 Jul 1. PMID 28973494, Free PMC Article
    2. Transcriptomic analysis of the housefly (Musca domestica) larva using massively parallel pyrosequencing. Liu F, et al. Mol Biol Rep, 2012 Feb. PMID 21643958
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. When M. domestica larvae were challenged with microbes or when they received a short-term heat shock, mRNA expression was higher.
      Title: Characterization and Expression Pattern Analysis of the T-Complex Protein-1 Zeta Subunit in Musca domestica L (Diptera).
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chaperonin-containing T-complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chaperonin containing TCP1 subunit 6
    Names
    T-complex protein 1 subunit zeta
    NP_001295920.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001308991.1 → NP_001295920.1  chaperonin containing TCP1 subunit 6

      See identical proteins and their annotated locations for NP_001295920.1

      Status: PROVISIONAL

      Source sequence(s)
      KM215143
      UniProtKB/TrEMBL
      A0A097P6I7, T1PGT2
      Conserved Domains (2) summary
      cd03342
      Location:7 → 526
      TCP1_zeta; TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL) ...
      TIGR02347
      Location:3 → 530
      chap_CCT_zeta; T-complex protein 1, zeta subunit

    RefSeqs of Annotated Genomes: GCF_030504385.1-RS_2023_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Musca_domestica.polishedcontigs.V.1.1 Primary Assembly

    Genomic

    1. NW_026712172.1 Reference Musca_domestica.polishedcontigs.V.1.1 Primary Assembly

      Range
      9958531..9962467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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