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    LOC106172625 copine-8 [ Lingula anatina ]

    Gene ID: 106172625, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106172625
    Gene description
    copine-8
    See related
    EnsemblRapid:LOC106172625
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106172625 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775591.1 (770228..782219, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013579955.1 (110344..122335, complement)

    NW_019775591.1Genomic Context describing neighboring genes Neighboring gene spermine oxidase Neighboring gene histone deacetylase 6-like Neighboring gene constitutive coactivator of PPAR-gamma-like protein 1 homolog Neighboring gene EKC/KEOPS complex subunit Tprkb

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to calcium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copine-8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775591.1 Reference LinAna2.0 Primary Assembly

      Range
      770228..782219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013553416.1 → XP_013408870.1  copine-8 isoform X3

      UniProtKB/TrEMBL
      A0A1S3JEM9
      Related
      XP_013408870.1, XM_013553416.1
      Conserved Domains (3) summary
      cd04047
      Location:146 → 257
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:15 → 132
      C2A_Copine; C2 domain first repeat in Copine
      cd01459
      Location:270 → 524
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...

    2. XM_013553415.1 → XP_013408869.1  copine-8 isoform X2

      UniProtKB/TrEMBL
      A0A1S3JG44
      Related
      XP_013408869.1, XM_013553415.1
      Conserved Domains (3) summary
      cd04047
      Location:146 → 257
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:15 → 132
      C2A_Copine; C2 domain first repeat in Copine
      cd01459
      Location:270 → 524
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...

    3. XM_013553414.1 → XP_013408868.1  copine-8 isoform X1

      UniProtKB/TrEMBL
      A0A1S3JEV2
      Related
      XP_013408868.1, XM_013553414.1
      Conserved Domains (3) summary
      cd04047
      Location:147 → 258
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:15 → 132
      C2A_Copine; C2 domain first repeat in Copine
      cd01459
      Location:271 → 525
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
    Nucleotide Protein
    Heading Accession and Version

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