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    LOC25493568 uncharacterized LOC25493568 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25493568, updated on 22-Apr-2023

    Summary

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    Gene symbol
    LOC25493568
    Gene description
    uncharacterized LOC25493568
    Locus tag
    MtrunA17_Chr4g0055241
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25493568 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (48944359..48952485, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (41015138..41023276, complement)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene BOI-related E3 ubiquitin-protein ligase 1 Neighboring gene U2 spliceosomal RNA Neighboring gene poly(U)-specific endoribonuclease-B Neighboring gene beta-amylase 3, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC25493568
    Names
    putative transcription factor STY-LRP1 family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      48944359..48952485 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013602099.3 → XP_013457553.1  uncharacterized protein LOC25493568 isoform X2

      UniProtKB/TrEMBL
      A0A072UP12
      Conserved Domains (1) summary
      TIGR01623
      Location:38 → 77
      put_zinc_LRP1; putative zinc finger domain, LRP1 type

    2. XM_013602100.3 → XP_013457554.1  uncharacterized protein LOC25493568 isoform X1

      UniProtKB/TrEMBL
      A0A072V0D3
      Conserved Domains (2) summary
      pfam11744
      Location:243 → 324
      ALMT; Aluminium activated malate transporter
      cl27070
      Location:38 → 77
      DUF702; Domain of unknown function (DUF702)
    Nucleotide Protein
    Heading Accession and Version

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