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    ube4b ubiquitination factor E4B, UFD2 homolog (S. cerevisiae) [ Poeciliopsis prolifica (blackstripe livebearer) ]

    Gene ID: 129372319, updated on 10-Oct-2024

    Summary

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    Gene symbol
    ube4b
    Gene description
    ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Poeciliopsis prolifica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poeciliopsis
    Orthologs
    human zebrafish all
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    Genomic context

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    See ube4b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2023_04 current Auburn_PproV2 (GCF_027474105.1) Unplaced Scaffold NW_026562404.1 (2808974..2824047, complement)

    NW_026562404.1Genomic Context describing neighboring genes Neighboring gene phosphogluconate dehydrogenase Neighboring gene kinesin family member 1B Neighboring gene retinol binding protein 7a, cellular Neighboring gene nicotinamide nucleotide adenylyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_026562404 Unplaced Scaffold Reference Auburn_PproV2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-ubiquitin ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin conjugation factor E4 B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027474105.1-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Auburn_PproV2

    Genomic

    1. NW_026562404.1 Reference Auburn_PproV2

      Range
      2808974..2824047 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_055049534.1 → XP_054905509.1  ubiquitin conjugation factor E4 B isoform X2

      UniProtKB/TrEMBL
      A0A0S7ESZ7

    2. XM_055049533.1 → XP_054905508.1  ubiquitin conjugation factor E4 B isoform X1

    Nucleotide Protein
    Heading Accession and Version

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