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    LOC107223879 E3 ubiquitin-protein ligase RNF19A [ Neodiprion lecontei (redheaded pine sawfly) ]

    Gene ID: 107223879, updated on 1-Oct-2024

    Summary

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    Gene symbol
    LOC107223879
    Gene description
    E3 ubiquitin-protein ligase RNF19A
    See related
    EnsemblRapid:ENSNLCG00000014856
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Neodiprion lecontei
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Diprionidae; Diprioninae; Neodiprion
    Orthologs
    honey bee all
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    Genomic context

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    See LOC107223879 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current iyNeoLeco1.1 (GCF_021901455.1) 1 NC_060260.1 (4404914..4417597, complement)
    100 previous assembly Nlec1.0 (GCF_001263575.1) Unplaced Scaffold NW_015384976.1 (46912..58154, complement)

    Chromosome 1 - NC_060260.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein 44 Neighboring gene uncharacterized LOC107223881 Neighboring gene dusky Neighboring gene Tetraspanin 26A Neighboring gene SET and MYND domain-containing protein 4 Neighboring gene tachykinin-like peptides receptor 86C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF19A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Neodiprion lecontei Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference iyNeoLeco1.1

    Genomic

    1. NC_060260.1 Reference iyNeoLeco1.1

      Range
      4404914..4417597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015663711.2 → XP_015519197.1  E3 ubiquitin-protein ligase RNF19A

      UniProtKB/TrEMBL
      A0A6J0BYJ2
      Conserved Domains (4) summary
      smart00647
      Location:177 → 242
      IBR; In Between Ring fingers
      pfam01485
      Location:271 → 309
      IBR; IBR domain, a half RING-finger domain
      pfam13639
      Location:109 → 157
      zf-RING_2; Ring finger domain
      cl00570
      Location:335 → 415
      AzlC; AzlC protein

    2. XM_046731540.1 → XP_046587496.1  E3 ubiquitin-protein ligase RNF19A

      UniProtKB/TrEMBL
      A0A6J0BYJ2
      Related
      ENSNLCP00000028203.1, ENSNLCT00000032059.1

    3. XM_046731531.1 → XP_046587487.1  E3 ubiquitin-protein ligase RNF19A

      UniProtKB/TrEMBL
      A0A6J0BYJ2
      Related
      ENSNLCP00000028188.1, ENSNLCT00000032042.1

    4. XM_046731534.1 → XP_046587490.1  E3 ubiquitin-protein ligase RNF19A

      UniProtKB/TrEMBL
      A0A6J0BYJ2
    Nucleotide Protein
    Heading Accession and Version

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