U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC110252286 E3 ubiquitin-protein ligase RNF14 [ Exaiptasia diaphana ]

    Gene ID: 110252286, updated on 23-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC110252286
    Gene description
    E3 ubiquitin-protein ligase RNF14
    Locus tag
    AC249_AIPGENE1187
    See related
    EnsemblRapid:LOC110252286
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Exaiptasia diaphana
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
    Also known as
    RNF14
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC110252286 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018388191.1 (1284957..1289459, complement)

    NW_018388191.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene octopamine receptor Neighboring gene ribosomal RNA small subunit methyltransferase NEP1 Neighboring gene TLC domain-containing protein 2 Neighboring gene uncharacterized LOC110252338 Neighboring gene uncharacterized LOC110252335 Neighboring gene tetraspanin-8

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_018388191 Unplaced Scaffold Reference Aiptasia genome 1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase RNF14

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aiptasia genome 1.1

    Genomic

    1. NW_018388191.1 Reference Aiptasia genome 1.1

      Range
      1284957..1289459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021059073.2 → XP_020914732.1  E3 ubiquitin-protein ligase RNF14

      UniProtKB/TrEMBL
      A0A913Y4S5
      Related
      XP_020914732.1, XM_021059073.2
      Conserved Domains (4) summary
      smart00647
      Location:335 → 397
      IBR; In Between Ring fingers
      pfam01485
      Location:437 → 482
      IBR; IBR domain, a half RING-finger domain
      pfam05773
      Location:136 → 207
      RWD; RWD domain
      cl17238
      Location:264 → 317
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.