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    LOC109527525 E3 SUMO-protein ligase CBX4-like [ Hippocampus comes (tiger tail seahorse) ]

    Gene ID: 109527525, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC109527525
    Gene description
    E3 SUMO-protein ligase CBX4-like
    See related
    Ensembl:ENSHCOG00000013487
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hippocampus comes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805882.1 (4938908..4945370, complement)

    NW_017805882.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C17orf67 homolog Neighboring gene chromobox homolog 8b Neighboring gene coiled-coil domain-containing protein 40-like Neighboring gene caspase recruitment domain family, member 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_017805882.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 SUMO-protein ligase CBX4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference H_comes_QL1_v1 Primary Assembly

    Genomic

    1. NW_017805882.1 Reference H_comes_QL1_v1 Primary Assembly

      Range
      4938908..4945370 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019889515.1 → XP_019745074.1  E3 SUMO-protein ligase CBX4-like

      UniProtKB/TrEMBL
      A0A3Q3DZ74
      Related
      ENSHCOP00000024286.1, ENSHCOT00000017335.1
      Conserved Domains (2) summary
      smart00298
      Location:10 → 62
      CHROMO; Chromatin organization modifier domain
      pfam17218
      Location:531 → 559
      CBX7_C; CBX family C-terminal motif
    Nucleotide Protein
    Heading Accession and Version

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