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    RARA retinoic acid receptor alpha [ Delphinapterus leucas (beluga whale) ]

    Gene ID: 111166235, updated on 15-Mar-2024

    Summary

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    Gene symbol
    RARA
    Gene description
    retinoic acid receptor alpha
    See related
    Ensembl:ENSDLEG00000013307
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Delphinapterus leucas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
    Also known as
    nr1b1
    Orthologs
    human mouse all
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    Genomic context

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    See RARA in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098018.1 (3421288..3456127, complement)
    100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160956.1 (1734258..1769123, complement)

    NW_022098018.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L27a pseudogene Neighboring gene gap junction protein delta 3 Neighboring gene cell division cycle 6 Neighboring gene WAS/WASL interacting protein family member 2 Neighboring gene uncharacterized LOC111166428 Neighboring gene Rap guanine nucleotide exchange factor like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor alpha
    Names
    nuclear transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM228892v3 Primary Assembly

    Genomic

    1. NW_022098018.1 Reference ASM228892v3 Primary Assembly

      Range
      3421288..3456127 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022557698.2 → XP_022413406.1  retinoic acid receptor alpha isoform X2

      UniProtKB/TrEMBL
      A0A2Y9LXA0
      Conserved Domains (2) summary
      cd06937
      Location:186 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    2. XM_022557699.2 → XP_022413407.1  retinoic acid receptor alpha isoform X2

      UniProtKB/TrEMBL
      A0A2Y9LXA0
      Conserved Domains (2) summary
      cd06937
      Location:186 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    3. XM_030762204.1 → XP_030618064.1  retinoic acid receptor alpha isoform X2

      UniProtKB/TrEMBL
      A0A2Y9LXA0
      Conserved Domains (2) summary
      cd06937
      Location:186 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    4. XM_030762206.1 → XP_030618066.1  retinoic acid receptor alpha isoform X2

      UniProtKB/TrEMBL
      A0A2Y9LXA0
      Related
      ENSDLEP00000018217.1, ENSDLET00000020102.1
      Conserved Domains (2) summary
      cd06937
      Location:186 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    5. XM_030762205.1 → XP_030618065.1  retinoic acid receptor alpha isoform X2

      UniProtKB/TrEMBL
      A0A2Y9LXA0
      Conserved Domains (2) summary
      cd06937
      Location:186 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    6. XM_022557696.2 → XP_022413404.1  retinoic acid receptor alpha isoform X1

      UniProtKB/TrEMBL
      A0A2Y9LUM6
      Conserved Domains (2) summary
      cd06937
      Location:292 → 522
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:188 → 272
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    7. XM_022557702.2 → XP_022413410.1  retinoic acid receptor alpha isoform X5

      UniProtKB/TrEMBL
      A0A2Y9LVH3
      Conserved Domains (2) summary
      cd06937
      Location:308 → 538
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:204 → 288
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    8. XM_022557700.2 → XP_022413408.1  retinoic acid receptor alpha isoform X3

      UniProtKB/TrEMBL
      A0A2Y9M7Q1
      Related
      ENSDLEP00000018234.1, ENSDLET00000020119.1
      Conserved Domains (2) summary
      cd06937
      Location:183 → 413
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:79 → 163
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    9. XM_022557701.2 → XP_022413409.1  retinoic acid receptor alpha isoform X4

      UniProtKB/TrEMBL
      A0A2Y9LUN1
      Conserved Domains (2) summary
      cd06937
      Location:133 → 363
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:29 → 113
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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