U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    rnf34b ring finger protein 34b [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

    Gene ID: 115430866, updated on 17-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    rnf34b
    Gene description
    ring finger protein 34b
    See related
    Ensembl:ENSSORG00005016366
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sphaeramia orbicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
    Orthologs
    zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rnf34b in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current fSphaOr1.1 (GCF_902148855.1) 12 NC_043968.1 (72147306..72185741, complement)

    Chromosome 12 - NC_043968.1Genomic Context describing neighboring genes Neighboring gene ORAI calcium release-activated calcium modulator 1b Neighboring gene lysine (K)-specific demethylase 2Bb Neighboring gene glutathione hydrolase 1 proenzyme-like Neighboring gene glutathione hydrolase 5 proenzyme-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_043968.1 Chromosome 12 Reference fSphaOr1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of extrinsic apoptotic signaling pathway via death domain receptors IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K48-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase RNF34-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSphaOr1.1

    Genomic

    1. NC_043968.1 Reference fSphaOr1.1

      Range
      72147306..72185741 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030151138.1 → XP_030006998.1  E3 ubiquitin-protein ligase RNF34-like isoform X4

      UniProtKB/TrEMBL
      A0A673AY49, A0A673AYJ8
      Related
      ENSSORP00005034726.1, ENSSORT00005035649.1
      Conserved Domains (2) summary
      cd16706
      Location:355 → 393
      RING-HC_CARP1; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein 1 (CARP1) and similar proteins
      cl28890
      Location:59 → 105
      FYVE_like_SF; FYVE domain like superfamily

    2. XM_030151135.1 → XP_030006995.1  E3 ubiquitin-protein ligase RNF34-like isoform X2

      UniProtKB/TrEMBL
      A0A673AYJ8
      Conserved Domains (2) summary
      cd16706
      Location:369 → 407
      RING-HC_CARP1; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein 1 (CARP1) and similar proteins
      cl28890
      Location:59 → 105
      FYVE_like_SF; FYVE domain like superfamily

    3. XM_030151137.1 → XP_030006997.1  E3 ubiquitin-protein ligase RNF34-like isoform X3

      UniProtKB/TrEMBL
      A0A673AYJ8
      Conserved Domains (2) summary
      cd16706
      Location:360 → 398
      RING-HC_CARP1; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein 1 (CARP1) and similar proteins
      cl28890
      Location:59 → 105
      FYVE_like_SF; FYVE domain like superfamily

    4. XM_030151134.1 → XP_030006994.1  E3 ubiquitin-protein ligase RNF34-like isoform X1

      UniProtKB/TrEMBL
      A0A673AYJ8
      Conserved Domains (2) summary
      cd16706
      Location:374 → 412
      RING-HC_CARP1; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein 1 (CARP1) and similar proteins
      cl28890
      Location:59 → 105
      FYVE_like_SF; FYVE domain like superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases