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    LOC128821393 mothers against decapentaplegic homolog 4 [ Vidua macroura (Pin-tailed whydah) ]

    Gene ID: 128821393, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC128821393
    Gene description
    mothers against decapentaplegic homolog 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vidua macroura
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Viduinae; Vidua
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    Genomic context

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    See LOC128821393 in Genome Data Viewer
    Location:
    chromosome: W
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_03 current ASM2450914v1 (GCF_024509145.1) W NC_071610.1 (2974644..3006517, complement)

    Chromosome W - NC_071610.1Genomic Context describing neighboring genes Neighboring gene SET-binding protein-like Neighboring gene RNA-binding E3 ubiquitin-protein ligase MEX3C-like Neighboring gene uncharacterized LOC128821379 Neighboring gene NAD-dependent malic enzyme, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_071610.1 Chromosome W Reference ASM2450914v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables I-SMAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in SMAD protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transforming growth factor beta receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of heteromeric SMAD protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mothers against decapentaplegic homolog 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_024509145.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2450914v1 Primary Assembly

    Genomic

    1. NC_071610.1 Reference ASM2450914v1 Primary Assembly

      Range
      2974644..3006517 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054002386.1 → XP_053858361.1  mothers against decapentaplegic homolog 4 isoform X1

    2. XM_054002387.1 → XP_053858362.1  mothers against decapentaplegic homolog 4 isoform X2

    3. XM_054002388.1 → XP_053858363.1  mothers against decapentaplegic homolog 4 isoform X3

    4. XM_054002389.1 → XP_053858364.1  mothers against decapentaplegic homolog 4 isoform X4

    RNA

    1. XR_008441094.1 RNA Sequence

    2. XR_008441093.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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