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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_145292.4 → NP_660335.2 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5
See identical proteins and their annotated locations for NP_660335.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the shorter transcript and encodes the functional protein.
- Source sequence(s)
-
AC074257, AW103179, BC022021
- Consensus CDS
-
CCDS5929.1
- UniProtKB/Swiss-Prot
- Q75KN2, Q75MD3, Q7Z4T8, Q8NCV4, Q8WW05, Q9UDR9
- Related
- ENSP00000376548.2, ENST00000392800.7
- Conserved Domains (2) summary
-
- cd02510
Location:137 → 433
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- COG1216
Location:134 → 384
- GT2; Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism]
RNA
-
NR_033169.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) contains an alternate exon in the 5' UTR and uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC074257, AK315667, AW103179
- Related
-
ENST00000426341.6
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000007.14 Reference GRCh38.p14 Primary Assembly
- Range
-
151956446..152019929
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006715862.5 → XP_006715925.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X2
See identical proteins and their annotated locations for XP_006715925.1
- UniProtKB/Swiss-Prot
- Q75KN2, Q75MD3, Q7Z4T8, Q8NCV4, Q8WW05, Q9UDR9
- Related
- ENSP00000392582.2, ENST00000431418.6
- Conserved Domains (2) summary
-
- cd02510
Location:137 → 433
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- COG1216
Location:134 → 384
- GT2; Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism]
-
XM_017011796.2 → XP_016867285.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X8
-
XM_017011795.2 → XP_016867284.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X7
-
XM_047419933.1 → XP_047275889.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X6
-
XM_017011793.3 → XP_016867282.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X1
- Conserved Domains (2) summary
-
- cd02510
Location:190 → 486
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- COG1216
Location:187 → 437
- GT2; Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism]
-
XM_017011794.1 → XP_016867283.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X5
-
XM_011515849.4 → XP_011514151.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X3
- Conserved Domains (2) summary
-
- cd02510
Location:64 → 360
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- COG1215
Location:57 → 285
- BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]
-
XM_011515853.3 → XP_011514155.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X4
See identical proteins and their annotated locations for XP_011514155.1
- Conserved Domains (2) summary
-
- cd02510
Location:26 → 322
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- COG1215
Location:19 → 247
- BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]
Alternate T2T-CHM13v2.0
Genomic
-
NC_060931.1 Alternate T2T-CHM13v2.0
- Range
-
153129390..153192856
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054357377.1 → XP_054213352.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X2
- UniProtKB/TrEMBL
-
A0A090N7Y5
-
XM_054357383.1 → XP_054213358.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X8
-
XM_054357382.1 → XP_054213357.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X7
-
XM_054357381.1 → XP_054213356.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X6
-
XM_054357376.1 → XP_054213351.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X1
-
XM_054357380.1 → XP_054213355.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X5
-
XM_054357378.1 → XP_054213353.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X3
-
XM_054357379.1 → XP_054213354.1 inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X4