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    LOC105369838 uncharacterized LOC105369838 [ Homo sapiens (human) ]

    Gene ID: 105369838, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105369838
    Gene description
    uncharacterized LOC105369838
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105369838 in Genome Data Viewer
    Location:
    12q21.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (72919910..73042903)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (72898018..73020946)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene thyrotropin releasing hormone degrading enzyme Neighboring gene NANOG hESC enhancer GRCh37_chr12:72837794-72838295 Neighboring gene MPRA-validated peak1828 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:72913564-72914146 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:72914147-72914728 Neighboring gene H3 histone pseudogene 35 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:72984702-72984887 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:73033440-73033988 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:73102101-73102706 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:73209905-73210447 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:73266315-73267514 Neighboring gene MPRA-validated peak1829 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:73394447-73395222 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:73584169-73585368 Neighboring gene long intergenic non-protein coding RNA 2444 Neighboring gene MPRA-validated peak1832 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:73683159-73683783 Neighboring gene uncharacterized LOC105369839 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:73709711-73710210

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      72919910..73042903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_945088.2 RNA Sequence

    2. XR_945089.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      72898018..73020946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007083467.1 RNA Sequence

    2. XR_007083468.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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