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    MIR3976HG MIR3976 host gene [ Homo sapiens (human) ]

    Gene ID: 645355, updated on 17-Sep-2024

    Summary

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    Official Symbol
    MIR3976HGprovided by HGNC
    Official Full Name
    MIR3976 host geneprovided by HGNC
    Primary source
    HGNC:HGNC:51104
    See related
    Ensembl:ENSG00000261738 AllianceGenome:HGNC:51104
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC01469
    Expression
    Restricted expression toward testis (RPKM 2.2) See more
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    Genomic context

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    See MIR3976HG in Genome Data Viewer
    Location:
    18p11.31
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (5748799..5914407)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (5908950..6074519)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (5748798..5914406)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371970 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:5395432-5396631 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:5456406-5456906 Neighboring gene erythrocyte membrane protein band 4.1 like 3 Neighboring gene uncharacterized LOC107985145 Neighboring gene NANOG hESC enhancer GRCh37_chr18:5624822-5625323 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:5629686-5630190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9263 Neighboring gene NANOG hESC enhancer GRCh37_chr18:5678118-5678619 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:5684410-5684994 Neighboring gene NANOG hESC enhancer GRCh37_chr18:5733383-5733915 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9264 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9265 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:5891299-5891826 Neighboring gene uncharacterized LOC121725015 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:5899993-5901192 Neighboring gene microRNA 3976 Neighboring gene transmembrane protein 200C Neighboring gene OCT4 hESC enhancer GRCh37_chr18:5941844-5942352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:5964119-5964619 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:5964978-5965478 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13057 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13058 Neighboring gene L3MBTL histone methyl-lysine binding protein 4 Neighboring gene Sharpr-MPRA regulatory region 6254 Neighboring gene RNA, U5F small nuclear 3, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:6146293-6146793 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13059 Neighboring gene L3MBTL4 antisense RNA 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of the breakpoint regions of a chromosome 11;18 translocation in a patient with hamartoma of the retinal pigment epithelium. Kutsche K, et al. Cytogenet Cell Genet, 2000. PMID 11173847
    2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • MIR3976 host gene (non-protein coding)
    • long intergenic non-protein coding RNA 1469

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038839.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF301223
      Related
      ENST00000566533.6

    2. NR_172494.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP005231, AP005433

    3. NR_172495.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP005231, AP005433

    4. NR_172496.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001021, AP005231, AP005433

    5. NR_172497.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001021, AP005231, AP005433

    6. NR_172498.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001021, AP005231, AP005433

    7. NR_172499.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP005231, AP005433

    8. NR_172500.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP005231, AP005433

    9. NR_172501.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP005231, AP005433

    10. NR_172502.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP005231, AP005433

    11. NR_172503.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001021, AP005231, AP005433

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      5748799..5914407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      5908950..6074519
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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