Sinorhizobium medicae (ID 1412) - Genome - NCBI

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Sinorhizobium medicae
Reference genome: Sinorhizobium medicae
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ID: 1412

Organism Overview ; Genome Assembly and Annotation report [74] ; Genome Tree report [51] ; Plasmid Annotation Report [53]

Sinorhizobium medicae

Nitrogen-fixing soil bacterium

Lineage: Bacteria[37515]; Pseudomonadota[11108]; Alphaproteobacteria[4469]; Hyphomicrobiales[1241]; Rhizobiaceae[237]; Sinorhizobium/Ensifer group[22]; Sinorhizobium[16]; Sinorhizobium medicae[1]

Sinorhizobium medicae.This species was isolated from Medicago truncatula, where it forms nitrogen-fixing root nodules. It was placed in a new taxon based on phylogenetic studies of the 16S gene.

Summary

Sequence data:

genome assemblies: 74; sequence reads: 140

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 6.78229

median protein count: 6157

median GC%: 61.1

Publications (limited to 20 most recent records)

Co-invading symbiotic mutualists of Medicago polymorpha retain high ancestral diversity and contain diverse accessory genomes. Porter SS, et al. FEMS Microbiol Ecol 2018 Jan 1
Genome-Wide Association Analyses in the Model Rhizobium Ensifer meliloti. Epstein B, et al. mSphere 2018 Oct 24
High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil. Ardley J, et al. Stand Genomic Sci 2015
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies. Sugawara M, et al. Genome Biol 2013 Feb 20
Local and systemic N signaling are involved in Medicago truncatula preference for the most efficient Sinorhizobium symbiotic partners. Laguerre G, et al. New Phytol 2012 Jul
Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicae. Epstein B, et al. PLoS Genet 2012
Ensifer, Phyllobacterium and Rhizobium species occupy nodules of Medicago sativa (alfalfa) and Melilotus alba (sweet clover) grown at a Canadian site without a history of cultivation. Bromfield ESP, et al. Microbiology (Reading) 2010 Feb
Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419. Reeve W, et al. Stand Genomic Sci 2010 Jan 28
Sinorhizobium medicae sp. nov., isolated from annual Medicago spp. Rome S, et al. Int J Syst Bacteriol 1996 Oct

Representative (genome information for reference and representative genomes)

Reference genome:

Sinorhizobium medicae ASM782769v1

Submitter: DOE Joint Genome Institute

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Un	-	.	-	6.53	61.2	6,010	3	48	4	6,282	217

Dendrogram (based on genomic BLAST)

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