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NCBI Anopheles cruzii Annotation Release GCF_943734635.1-RS_2023_02

The RefSeq genome records for Anopheles cruzii were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies.

Annotation Release GCF_943734635.1-RS_2023_02 is an update of GCF_943734635.1-RS_2023_01. The known RefSeq transcripts (with NM_ and NR_ prefixes) that were current on Feb 23 2023 were placed on the genome and used to update the annotated features. In addition, model RefSeq predicted in the last full annotation (GCF_943734635.1-RS_2023_01) that were still current on Feb 23 2023 were included in the updated annotation. These models were not re-calculated for this update. For more information on the evidence used for generating the model RefSeq, please consult the report for GCF_943734635.1-RS_2023_01.

The annotation products are available in the sequence databases and on the FTP site.

This report provides:

For more information on the annotation process, please visit the NCBI Eukaryotic Genome Annotation Pipeline page.


Annotation Release information

This annotation should be referred to as: "GCF_943734635.1-RS_2023_02".

Date of Entrez queries for transcripts and proteins: Feb 23 2023
Date of submission of annotation to the public databases: Feb 23 2023
Software version: 10.1

Assemblies

The following assemblies were included in this annotation run:
Assembly nameAssembly accessionSubmitterAssembly dateReference/AlternateAssembly content
idAnoCruzAS_RS32_06GCF_943734635.1WELLCOME SANGER INSTITUTE06-24-2022Reference4 assembled chromosomes; unplaced scaffolds

Gene and feature statistics

Counts and length of annotated features are provided below for each assembly.

Feature counts

FeatureidAnoCruzAS_RS32_06
Genes and pseudogenes help12,401
  protein-coding11,841
  non-coding452
  Transcribed pseudogenes0
  Non-transcribed pseudogenes108
  genes with variants1,447
  Immunoglobulin/T-cell receptor gene segments0
  other0
mRNAs14,288
  fully-supported10,643
  with > 5% ab initio help1,790
  partial687
  with filled gap(s) help0
  known RefSeq (NM_) help0
  model RefSeq (XM_)14,288
non-coding RNAs help581
  fully-supported260
  with > 5% ab initio help0
  partial2
  with filled gap(s) help0
  known RefSeq (NR_) help0
  model RefSeq (XR_) help298
pseudo transcripts help0
  fully-supported0
  with > 5% ab initio help0
  partial0
  with filled gap(s) help0
  known RefSeq (NR_) help0
  model RefSeq (XR_) help0
CDSs14,301
  fully-supported10,643
  with > 5% ab initio help1,946
  partial687
  with major correction(s) help144
  known RefSeq (NP_) help0
  model RefSeq (XP_) help14,301

Detailed reports

The counts below do not include pseudogenes.

BUSCO analysis of gene annotation

BUSCO v4.1.4 was run in "protein" mode on the annotated gene set picking one longest protein per gene, and run using the diptera_odb10 lineage dataset. Results are reported for the gene set from the primary assembly unit, and presented in BUSCO notation.

References