NCBI Simochromis diagramma Annotation Release 100
The RefSeq genome records for Simochromis diagramma were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.
The annotation products are available in the sequence databases and on the FTP site.
This report provides:
- Annotation Release information: The name of the release, important dates, the software version
- Assemblies: A brief description of the annotated assembly(ies)
- Gene and feature statistics: The counts and characteristics of the annotated features
- BUSCO results: Annotation completeness assessed with BUSCO
- Alignment of the annotated proteins to a set of high-quality proteins: The number of annotated proteins with hits to a set of high-quality proteins
- Masking of genomic sequence: How much of the genome was masked
- Transcript and protein alignments: The number and type of evidence retrieved from public databases and used for gene prediction
For more information on the annotation process, please visit the NCBI Eukaryotic Genome Annotation Pipeline page.
Annotation Release information
This annotation should be referred to as NCBI Simochromis diagramma Annotation Release 100Annotation release ID: 100
Date of Entrez queries for transcripts and proteins: Feb 24 2021
Date of submission of annotation to the public databases: Mar 12 2021
Software version: 8.6
Assemblies
The following assemblies were included in this annotation run:Assembly name | Assembly accession | Submitter | Assembly date | Reference/Alternate | Assembly content |
---|---|---|---|---|---|
fSimDia1.1 | GCF_900408965.1 | SC | 06-18-2018 | Reference | unplaced scaffolds |
Gene and feature statistics
Counts and length of annotated features are provided below for each assembly.Feature counts
Feature | fSimDia1.1 |
---|---|
Genes and pseudogenes | 33,618 |
protein-coding | 26,330 |
non-coding | 6,352 |
Transcribed pseudogenes | 0 |
Non-transcribed pseudogenes | 632 |
genes with variants | 11,996 |
Immunoglobulin/T-cell receptor gene segments | 304 |
other | 0 |
mRNAs | 53,676 |
fully-supported | 52,299 |
with > 5% ab initio | 597 |
partial | 213 |
with filled gap(s) | 0 |
known RefSeq (NM_) | 0 |
model RefSeq (XM_) | 53,676 |
non-coding RNAs | 8,654 |
fully-supported | 7,475 |
with > 5% ab initio | 0 |
partial | 0 |
with filled gap(s) | 0 |
known RefSeq (NR_) | 0 |
model RefSeq (XR_) | 7,820 |
pseudo transcripts | 0 |
fully-supported | 0 |
with > 5% ab initio | 0 |
partial | 0 |
with filled gap(s) | 0 |
known RefSeq (NR_) | 0 |
model RefSeq (XR_) | 0 |
CDSs | 53,980 |
fully-supported | 52,299 |
with > 5% ab initio | 734 |
partial | 274 |
with major correction(s) | 507 |
known RefSeq (NP_) | 0 |
model RefSeq (XP_) | 53,676 |
Detailed reports
The counts below do not include pseudogenes.Feature lengths
Feature | Count | Mean length (bp) | Median length (bp) | Min length (bp) | Max length (bp) |
---|---|---|---|---|---|
Genes | 32,682 | 16,785 | 7,475 | 56 | 914,567 |
All transcripts | 62,330 | 3,746 | 2,914 | 56 | 97,162 |
mRNA | 53,676 | 4,060 | 3,196 | 229 | 97,162 |
misc_RNA | 1,315 | 3,486 | 2,854 | 124 | 19,142 |
tRNA | 834 | 74 | 73 | 71 | 87 |
lncRNA | 6,160 | 1,770 | 947 | 88 | 64,883 |
snoRNA | 181 | 116 | 100 | 65 | 321 |
snRNA | 100 | 136 | 128 | 56 | 195 |
guide_RNA | 7 | 226 | 274 | 130 | 362 |
rRNA | 57 | 210 | 119 | 119 | 5,214 |
Single-exon transcripts | 1,037 | 2,136 | 1,779 | 270 | 16,465 |
coding transcripts (NM_/XM_ ) | 1,037 | 2,136 | 1,779 | 270 | 16,465 |
CDSs | 53,676 | 2,232 | 1,542 | 96 | 95,856 |
Exons | 322,694 | 364 | 142 | 1 | 63,218 |
in coding transcripts (NM_/XM_ ) | 304,065 | 349 | 142 | 1 | 63,218 |
in non-coding transcripts (NR_/XR_ ) | 25,794 | 497 | 150 | 2 | 62,603 |
Introns | 283,626 | 2,009 | 397 | 30 | 913,434 |
in coding transcripts (NM_/XM_ ) | 271,767 | 1,962 | 390 | 30 | 913,434 |
in non-coding transcripts (NR_/XR_ ) | 18,973 | 2,663 | 544 | 30 | 642,120 |
Transcripts per gene, exons per transcript
Mean | Median | Min | Max | |
---|---|---|---|---|
Number of transcripts per gene | 1.93 | 1 | 1 | 50 |
Number of exons per transcript | 12.36 | 9 | 1 | 254 |
BUSCO analysis of gene annotation
BUSCO v4.0.2 (Simão et al 2015, PMID: 26059717) was run in "protein" mode on the annotated gene set picking one longest protein per gene, and run using the actinopterygii_odb10 lineage dataset. Results are reported for the gene set from the primary assembly unit, and presented in BUSCO notation (C:complete [S:single-copy, D:duplicated], F:fragmented, M:missing, n:number of genes used).
Alignment of the annotated proteins to a set of high-quality proteins
The final set of annotated proteins was searched with BLASTP against the UniProtKB/Swiss-Prot curated proteins, using the annotated proteins as the query and the high-quality proteins as the target. Out of 26330 coding genes, 23398 genes had a protein with an alignment covering 50% or more of the query and 10643 had an alignment covering 95% or more of the query.Definition of query and target coverage. The query coverage is the percentage of the annotated protein length that is included in the alignment. The target coverage is the percentage of the target length that is included in the alignment.
Below is a cumulative graph displaying the number of genes with alignments above a given query or target coverage threshold. For comparison, corresponding statistics for other organisms annotated by the NCBI eukaryotic annotation pipeline were added to the graph.
Query: annotated proteinsTarget: UniProtKB/Swiss-Prot curated proteins
Masking of genomic sequence
Transcript and protein alignments are performed on the repeat-masked genome. Below are the percentages of genomic sequence masked by WindowMasker and RepeatMasker for each assembly. RepeatMasker results are only used for organisms for which a comprehensive repeat library is available.
For this annotation run, transcripts and proteins were aligned to the genome masked with WindowMasker only.Assembly name | Assembly accession | % Masked with RepeatMasker | % Masked with WindowMasker |
---|---|---|---|
fSimDia1.1 | GCF_900408965.1 | 0.00% | 28.40% |
Transcript and protein alignments
The annotation pipeline relies heavily on alignments of experimental evidence for gene prediction. Below are the sets of transcripts and proteins that were retrieved from Entrez, aligned to the genome by Splign, minimap2, or ProSplign and passed to Gnomon, NCBI's gene prediction software.
Transcript alignments
Source | Number of sequences retrieved from Entrez | Number (%) of sequences aligned by Splign | Number (%) of sequences passed to Gnomon | Average % identity | Average % coverage |
---|---|---|---|---|---|
Same-species Genbank | 10 | 10 (100.00%) | 10 (100.00%) | 99.90% | 100.00% |
RNA-Seq alignments
The following RNA-Seq reads from the Sequence Read Archive were also used for gene prediction:
Hide alignments statistics, by sample (SAME, SAMN, SAMD, DRS)Sample Id | Publication | Track name | Number of reads | Percent aligned reads | Percent of aligned reads with introns | Number of introns |
---|---|---|---|---|---|---|
All | NA | Aggregate of all aligned samples | 5,354,583,727 | 76% | 28% | 393,367 |
SAMEA5365117 | NA | lower pharyngeal jaw (Simochromis diagramma, female, SAMEA5365117) | 12,052,933 | 82% | 27% | 190,795 |
SAMEA5365118 | NA | gonad (Simochromis diagramma, female, SAMEA5365118) | 14,270,651 | 90% | 39% | 171,033 |
SAMEA5365120 | NA | anal fin (Simochromis diagramma, female, SAMEA5365120) | 12,981,435 | 81% | 26% | 181,963 |
SAMEA5365121 | NA | liver (Simochromis diagramma, female, SAMEA5365121) | 11,882,426 | 72% | 38% | 139,196 |
SAMEA5365122 | NA | muscle (Simochromis diagramma, female, SAMEA5365122) | 11,916,119 | 91% | 40% | 130,967 |
SAMEA5365125 | NA | brain (Simochromis diagramma, female, SAMEA5365125) | 12,484,462 | 84% | 16% | 186,320 |
SAMEA5365128 | NA | eye (Simochromis diagramma, female, SAMEA5365128) | 12,193,281 | 84% | 18% | 196,537 |
SAMEA5365130 | NA | heart (Simochromis diagramma, female, SAMEA5365130) | 13,697,803 | 83% | 25% | 162,363 |
SAMEA5365135 | NA | gill (Simochromis diagramma, female, SAMEA5365135) | 11,213,625 | 85% | 27% | 191,130 |
SAMN00996611 | NA | Llabiatus_juvenile (Lobochilotes labiatus, SAMN00996611) | 50,582,136 | 83% | 22% | 184,106 |
SAMN00996612 | NA | Llabiatus_adult (Lobochilotes labiatus, SAMN00996612) | 32,508,756 | 71% | 16% | 102,488 |
SAMN11552720 | NA | ventral bar region of skin (Tropheus duboisi, male, SAMN11552720) | 13,761,454 | 89% | 41% | 162,434 |
SAMN11552721 | NA | ventral bar region of skin (Tropheus duboisi, male, SAMN11552721) | 11,206,742 | 91% | 40% | 142,702 |
SAMN11552722 | NA | ventral bar region of skin (Tropheus duboisi, male, SAMN11552722) | 10,277,146 | 86% | 40% | 131,640 |
SAMN11552723 | NA | ventral bar region of skin (Tropheus duboisi, male, SAMN11552723) | 12,987,254 | 91% | 41% | 142,802 |
SAMN11552724 | NA | ventral bar region of skin (Tropheus duboisi, male, SAMN11552724) | 17,424,704 | 90% | 41% | 168,483 |
SAMN11552725 | NA | dorsal bar region of skin (Tropheus duboisi, male, SAMN11552725) | 6,718,652 | 81% | 37% | 116,619 |
SAMN11552726 | NA | dorsal bar region of skin (Tropheus duboisi, male, SAMN11552726) | 12,197,548 | 90% | 39% | 146,481 |
SAMN11552727 | NA | dorsal bar region of skin (Tropheus duboisi, male, SAMN11552727) | 15,695,914 | 91% | 40% | 165,448 |
SAMN11552728 | NA | dorsal bar region of skin (Tropheus duboisi, male, SAMN11552728) | 15,962,020 | 90% | 40% | 151,711 |
SAMN11552729 | NA | dorsal bar region of skin (Tropheus duboisi, male, SAMN11552729) | 9,549,544 | 91% | 40% | 142,101 |
SAMN11552730 | NA | ventral bar region of skin (Tropheus duboisi, male, SAMN11552730) | 24,862,946 | 92% | 41% | 168,515 |
SAMN11552731 | NA | ventral bar region of skin (Tropheus duboisi, male, SAMN11552731) | 24,378,366 | 93% | 42% | 180,197 |
SAMN11552732 | NA | ventral bar region of skin (Tropheus duboisi, male, SAMN11552732) | 16,210,676 | 92% | 40% | 153,368 |
SAMN11552733 | NA | ventral bar region of skin (Tropheus duboisi, male, SAMN11552733) | 23,938,370 | 92% | 42% | 186,647 |
SAMN11552734 | NA | ventral bar region of skin (Tropheus duboisi, male, SAMN11552734) | 17,545,034 | 92% | 41% | 169,977 |
SAMN11552735 | NA | dorsal bar region of skin (Tropheus duboisi, male, SAMN11552735) | 28,277,708 | 90% | 41% | 174,579 |
SAMN11552736 | NA | dorsal bar region of skin (Tropheus duboisi, male, SAMN11552736) | 21,836,592 | 92% | 39% | 166,975 |
SAMN11552737 | NA | dorsal bar region of skin (Tropheus duboisi, male, SAMN11552737) | 18,777,890 | 93% | 40% | 162,144 |
SAMN11552738 | NA | dorsal bar region of skin (Tropheus duboisi, male, SAMN11552738) | 25,537,022 | 93% | 42% | 186,558 |
SAMN11552739 | NA | dorsal bar region of skin (Tropheus duboisi, male, SAMN11552739) | 26,067,156 | 93% | 41% | 184,783 |
SAMN12246769 | NA | gonads (Interochromis loocki, male, SAMN12246769) | 17,228,837 | 65% | 25% | 204,852 |
SAMN12246770 | NA | liver (Interochromis loocki, male, SAMN12246770) | 8,848,204 | 60% | 34% | 106,181 |
SAMN12246771 | NA | lower pharyngeal jaw (Interochromis loocki, male, SAMN12246771) | 8,191,202 | 69% | 26% | 169,271 |
SAMN12246772 | NA | gills (Interochromis loocki, male, SAMN12246772) | 8,655,322 | 58% | 19% | 156,340 |
SAMN12246773 | NA | brain (Interochromis loocki, male, SAMN12246773) | 14,024,944 | 70% | 12% | 177,308 |
SAMN12246774 | NA | gonads (Interochromis loocki, female, SAMN12246774) | 11,322,482 | 82% | 36% | 169,378 |
SAMN12246775 | NA | lower pharyngeal jaw (Interochromis loocki, female, SAMN12246775) | 11,740,567 | 53% | 26% | 174,074 |
SAMN12246776 | NA | gills (Interochromis loocki, female, SAMN12246776) | 8,718,759 | 64% | 19% | 158,667 |
SAMN12246777 | NA | brain (Interochromis loocki, female, SAMN12246777) | 9,113,192 | 73% | 13% | 164,020 |
SAMN12246778 | NA | liver (Interochromis loocki, male, SAMN12246778) | 13,964,013 | 22% | 21% | 76,137 |
SAMN12246779 | NA | gonads (Interochromis loocki, male, SAMN12246779) | 10,258,388 | 78% | 22% | 180,790 |
SAMN12246780 | NA | gills (Interochromis loocki, male, SAMN12246780) | 25,061,674 | 66% | 23% | 195,053 |
SAMN12246781 | NA | lower pharyngeal jaw (Interochromis loocki, male, SAMN12246781) | 7,723,896 | 62% | 23% | 157,013 |
SAMN12246782 | NA | brain (Interochromis loocki, male, SAMN12246782) | 8,764,601 | 69% | 14% | 158,679 |
SAMN12246783 | NA | liver (Interochromis loocki, male, SAMN12246783) | 9,492,363 | 69% | 32% | 113,229 |
SAMN12246784 | NA | gonads (Interochromis loocki, male, SAMN12246784) | 11,140,611 | 76% | 22% | 199,496 |
SAMN12246785 | NA | gills (Interochromis loocki, male, SAMN12246785) | 10,959,522 | 71% | 21% | 183,650 |
SAMN12246786 | NA | lower pharyngeal jaw (Interochromis loocki, male, SAMN12246786) | 10,408,652 | 58% | 25% | 175,532 |
SAMN12246787 | NA | brain (Interochromis loocki, male, SAMN12246787) | 9,372,624 | 75% | 17% | 174,256 |
SAMN12246788 | NA | gonads (Interochromis loocki, male, SAMN12246788) | 9,605,399 | 78% | 23% | 195,611 |
SAMN12246789 | NA | liver (Interochromis loocki, male, SAMN12246789) | 8,747,468 | 61% | 29% | 100,439 |
SAMN12246790 | NA | gills (Interochromis loocki, male, SAMN12246790) | 10,019,456 | 73% | 24% | 182,444 |
SAMN12246791 | NA | lower pharyngeal jaw (Interochromis loocki, male, SAMN12246791) | 9,972,286 | 63% | 29% | 175,568 |
SAMN12246792 | NA | brain (Interochromis loocki, male, SAMN12246792) | 21,069,013 | 77% | 12% | 198,560 |
SAMN12246793 | NA | gonads (Interochromis loocki, female, SAMN12246793) | 9,143,282 | 85% | 36% | 169,336 |
SAMN12246794 | NA | liver (Interochromis loocki, female, SAMN12246794) | 8,774,684 | 64% | 32% | 88,027 |
SAMN12246795 | NA | gills (Interochromis loocki, female, SAMN12246795) | 7,989,979 | 77% | 21% | 167,136 |
SAMN12246796 | NA | lower pharyngeal jaw (Interochromis loocki, female, SAMN12246796) | 9,193,137 | 75% | 25% | 171,751 |
SAMN12246797 | NA | brain (Interochromis loocki, female, SAMN12246797) | 10,317,661 | 77% | 14% | 172,948 |
SAMN12247481 | NA | liver (Lobochilotes labiatus, male, SAMN12247481) | 9,976,447 | 62% | 34% | 100,525 |
SAMN12247482 | NA | gonads (Lobochilotes labiatus, male, SAMN12247482) | 8,690,052 | 74% | 23% | 198,361 |
SAMN12247483 | NA | gills (Lobochilotes labiatus, male, SAMN12247483) | 15,031,238 | 74% | 23% | 196,526 |
SAMN12247484 | NA | lower pharyngeal jaw (Lobochilotes labiatus, male, SAMN12247484) | 17,502,704 | 69% | 25% | 193,871 |
SAMN12247485 | NA | brain (Lobochilotes labiatus, male, SAMN12247485) | 9,469,113 | 80% | 13% | 165,447 |
SAMN12247486 | NA | liver (Lobochilotes labiatus, male, SAMN12247486) | 9,232,393 | 71% | 35% | 114,152 |
SAMN12247487 | NA | gonads (Lobochilotes labiatus, male, SAMN12247487) | 10,850,051 | 74% | 24% | 207,931 |
SAMN12247488 | NA | gills (Lobochilotes labiatus, male, SAMN12247488) | 9,526,406 | 73% | 19% | 175,383 |
SAMN12247489 | NA | lower pharyngeal jaw (Lobochilotes labiatus, male, SAMN12247489) | 13,374,374 | 69% | 29% | 188,889 |
SAMN12247490 | NA | brain (Lobochilotes labiatus, male, SAMN12247490) | 15,402,961 | 81% | 12% | 183,511 |
SAMN12247491 | NA | liver (Lobochilotes labiatus, female, SAMN12247491) | 9,251,854 | 77% | 36% | 110,851 |
SAMN12247492 | NA | gonads (Lobochilotes labiatus, female, SAMN12247492) | 9,304,355 | 91% | 39% | 154,406 |
SAMN12247493 | NA | gills (Lobochilotes labiatus, female, SAMN12247493) | 8,639,164 | 64% | 20% | 167,524 |
SAMN12247494 | NA | lower pharyngeal jaw (Lobochilotes labiatus, female, SAMN12247494) | 8,876,815 | 69% | 24% | 172,471 |
SAMN12247495 | NA | brain (Lobochilotes labiatus, female, SAMN12247495) | 10,330,308 | 78% | 16% | 175,819 |
SAMN12247496 | NA | gonads (Lobochilotes labiatus, female, SAMN12247496) | 10,953,442 | 90% | 38% | 163,802 |
SAMN12247497 | NA | gills (Lobochilotes labiatus, female, SAMN12247497) | 21,869,322 | 70% | 21% | 205,990 |
SAMN12247498 | NA | lower pharyngeal jaw (Lobochilotes labiatus, female, SAMN12247498) | 10,237,515 | 56% | 30% | 172,722 |
SAMN12247499 | NA | brain (Lobochilotes labiatus, female, SAMN12247499) | 9,544,941 | 81% | 13% | 163,704 |
SAMN12247500 | NA | liver (Lobochilotes labiatus, female, SAMN12247500) | 9,161,915 | 47% | 30% | 95,575 |
SAMN12247501 | NA | gonads (Lobochilotes labiatus, female, SAMN12247501) | 16,344,139 | 90% | 39% | 171,895 |
SAMN12247502 | NA | gills (Lobochilotes labiatus, female, SAMN12247502) | 10,103,827 | 76% | 19% | 175,573 |
SAMN12247503 | NA | lower pharyngeal jaw (Lobochilotes labiatus, female, SAMN12247503) | 9,187,944 | 62% | 27% | 169,123 |
SAMN12247504 | NA | brain (Lobochilotes labiatus, female, SAMN12247504) | 8,432,854 | 80% | 14% | 164,558 |
SAMN12247505 | NA | liver (Lobochilotes labiatus, male, SAMN12247505) | 22,413,440 | 52% | 29% | 122,676 |
SAMN12247506 | NA | gonads (Lobochilotes labiatus, male, SAMN12247506) | 11,788,859 | 81% | 24% | 212,622 |
SAMN12247507 | NA | gills (Lobochilotes labiatus, male, SAMN12247507) | 9,315,637 | 57% | 16% | 145,935 |
SAMN12247508 | NA | lower pharyngeal jaw (Lobochilotes labiatus, male, SAMN12247508) | 9,540,009 | 61% | 26% | 170,957 |
SAMN12247509 | NA | brain (Lobochilotes labiatus, male, SAMN12247509) | 14,523,244 | 73% | 14% | 182,987 |
SAMN12247903 | NA | gonads (Petrochromis trewavasae ephippium, female, SAMN12247903) | 10,126,505 | 92% | 38% | 166,845 |
SAMN12247904 | NA | liver (Petrochromis trewavasae ephippium, female, SAMN12247904) | 6,692,296 | 40% | 28% | 65,063 |
SAMN12247905 | NA | lower pharyngeal jaw (Petrochromis trewavasae ephippium, female, SAMN12247905) | 9,197,498 | 53% | 25% | 161,990 |
SAMN12247906 | NA | gills (Petrochromis trewavasae ephippium, female, SAMN12247906) | 7,800,519 | 61% | 22% | 162,551 |
SAMN12247907 | NA | brain (Petrochromis trewavasae ephippium, female, SAMN12247907) | 9,959,897 | 74% | 13% | 168,433 |
SAMN12247908 | NA | gonads (Petrochromis trewavasae ephippium, female, SAMN12247908) | 9,161,663 | 89% | 39% | 154,122 |
SAMN12247909 | NA | gills (Petrochromis trewavasae ephippium, female, SAMN12247909) | 9,213,306 | 72% | 22% | 176,333 |
SAMN12247910 | NA | lower pharyngeal jaw (Petrochromis trewavasae ephippium, female, SAMN12247910) | 9,057,357 | 62% | 27% | 169,094 |
SAMN12247911 | NA | brain (Petrochromis trewavasae ephippium, female, SAMN12247911) | 10,369,117 | 65% | 15% | 164,854 |
SAMN12247912 | NA | liver (Petrochromis trewavasae ephippium, female, SAMN12247912) | 9,776,240 | 65% | 35% | 108,673 |
SAMN12247913 | NA | gonads (Petrochromis trewavasae ephippium, female, SAMN12247913) | 11,213,423 | 88% | 38% | 164,808 |
SAMN12247914 | NA | gills (Petrochromis trewavasae ephippium, female, SAMN12247914) | 10,107,432 | 77% | 22% | 180,189 |
SAMN12247915 | NA | lower pharyngeal jaw (Petrochromis trewavasae ephippium, female, SAMN12247915) | 14,513,979 | 67% | 26% | 193,932 |
SAMN12247916 | NA | brain (Petrochromis trewavasae ephippium, female, SAMN12247916) | 13,851,802 | 80% | 14% | 184,734 |
SAMN12247917 | NA | liver (Petrochromis trewavasae ephippium, male, SAMN12247917) | 9,468,771 | 58% | 35% | 108,873 |
SAMN12247918 | NA | gonads (Petrochromis trewavasae ephippium, male, SAMN12247918) | 9,440,675 | 82% | 25% | 207,739 |
SAMN12247919 | NA | gills (Petrochromis trewavasae ephippium, male, SAMN12247919) | 9,467,590 | 74% | 19% | 175,966 |
SAMN12247920 | NA | lower pharyngeal jaw (Petrochromis trewavasae ephippium, male, SAMN12247920) | 9,674,406 | 59% | 27% | 175,523 |
SAMN12247921 | NA | brain (Petrochromis trewavasae ephippium, male, SAMN12247921) | 10,038,173 | 75% | 15% | 173,077 |
SAMN12247922 | NA | liver (Petrochromis trewavasae ephippium, male, SAMN12247922) | 8,697,710 | 24% | 21% | 58,055 |
SAMN12247923 | NA | gonads (Petrochromis trewavasae ephippium, male, SAMN12247923) | 8,302,359 | 83% | 25% | 193,253 |
SAMN12247924 | NA | gills (Petrochromis trewavasae ephippium, male, SAMN12247924) | 10,723,284 | 50% | 20% | 159,381 |
SAMN12247925 | NA | lower pharyngeal jaw (Petrochromis trewavasae ephippium, male, SAMN12247925) | 10,034,469 | 56% | 28% | 170,530 |
SAMN12247926 | NA | brain (Petrochromis trewavasae ephippium, male, SAMN12247926) | 8,944,654 | 66% | 13% | 156,564 |
SAMN12247927 | NA | liver (Petrochromis trewavasae ephippium, male, SAMN12247927) | 20,783,685 | 48% | 11% | 42,268 |
SAMN12247928 | NA | gonads (Petrochromis trewavasae ephippium, male, SAMN12247928) | 10,424,113 | 18% | 4% | 40,026 |
SAMN12247929 | NA | gills (Petrochromis trewavasae ephippium, male, SAMN12247929) | 9,268,417 | 69% | 21% | 172,102 |
SAMN12247930 | NA | lower pharyngeal jaw (Petrochromis trewavasae ephippium, male, SAMN12247930) | 9,047,212 | 60% | 29% | 171,248 |
SAMN12247931 | NA | brain (Petrochromis trewavasae ephippium, male, SAMN12247931) | 8,557,095 | 81% | 14% | 167,322 |
SAMN12247932 | NA | liver (Petrochromis famula, female, SAMN12247932) | 9,599,059 | 55% | 32% | 107,553 |
SAMN12247933 | NA | gonads (Petrochromis famula, female, SAMN12247933) | 10,461,619 | 72% | 35% | 153,158 |
SAMN12247934 | NA | gills (Petrochromis famula, female, SAMN12247934) | 9,645,199 | 81% | 24% | 180,582 |
SAMN12247935 | NA | lower pharyngeal jaw (Petrochromis famula, female, SAMN12247935) | 11,140,177 | 73% | 27% | 181,686 |
SAMN12247936 | NA | brain (Petrochromis famula, female, SAMN12247936) | 10,729,725 | 78% | 12% | 170,631 |
SAMN12247937 | NA | liver (Petrochromis famula, male, SAMN12247937) | 11,322,796 | 70% | 37% | 121,798 |
SAMN12247938 | NA | gonads (Petrochromis famula, male, SAMN12247938) | 9,931,596 | 83% | 26% | 203,557 |
SAMN12247939 | NA | gills (Petrochromis famula, male, SAMN12247939) | 8,793,676 | 79% | 24% | 178,427 |
SAMN12247940 | NA | lower pharyngeal jaw (Petrochromis famula, male, SAMN12247940) | 9,444,860 | 76% | 26% | 180,731 |
SAMN12247941 | NA | brain (Petrochromis famula, male, SAMN12247941) | 12,463,107 | 72% | 14% | 173,452 |
SAMN12247942 | NA | liver (Petrochromis famula, female, SAMN12247942) | 7,567,665 | 49% | 30% | 87,545 |
SAMN12247943 | NA | gonads (Petrochromis famula, female, SAMN12247943) | 10,218,705 | 90% | 38% | 163,938 |
SAMN12247944 | NA | gills (Petrochromis famula, female, SAMN12247944) | 10,758,847 | 74% | 22% | 182,015 |
SAMN12247945 | NA | lower pharyngeal jaw (Petrochromis famula, female, SAMN12247945) | 12,342,554 | 70% | 30% | 186,943 |
SAMN12247946 | NA | brain (Petrochromis famula, female, SAMN12247946) | 30,345,706 | 84% | 12% | 208,297 |
SAMN12247947 | NA | liver (Petrochromis famula, male, SAMN12247947) | 8,601,069 | 52% | 30% | 90,353 |
SAMN12247948 | NA | gonads (Petrochromis famula, male, SAMN12247948) | 9,750,520 | 71% | 21% | 173,413 |
SAMN12247949 | NA | gills (Petrochromis famula, male, SAMN12247949) | 8,846,405 | 74% | 20% | 171,350 |
SAMN12247950 | NA | lower pharyngeal jaw (Petrochromis famula, male, SAMN12247950) | 8,718,563 | 68% | 25% | 173,063 |
SAMN12247951 | NA | brain (Petrochromis famula, male, SAMN12247951) | 8,660,523 | 74% | 14% | 162,033 |
SAMN12247952 | NA | liver (Petrochromis famula, female, SAMN12247952) | 8,954,559 | 69% | 36% | 109,627 |
SAMN12247953 | NA | gonads (Petrochromis famula, female, SAMN12247953) | 7,387,650 | 91% | 37% | 153,612 |
SAMN12247954 | NA | gills (Petrochromis famula, female, SAMN12247954) | 13,663,448 | 76% | 24% | 193,486 |
SAMN12247955 | NA | lower pharyngeal jaw (Petrochromis famula, female, SAMN12247955) | 25,843,872 | 79% | 23% | 208,080 |
SAMN12247956 | NA | brain (Petrochromis famula, female, SAMN12247956) | 9,327,357 | 82% | 16% | 176,633 |
SAMN12247957 | NA | liver (Petrochromis famula, male, SAMN12247957) | 11,500,905 | 21% | 25% | 66,179 |
SAMN12247958 | NA | gonads (Petrochromis famula, male, SAMN12247958) | 9,346,600 | 81% | 22% | 176,412 |
SAMN12247959 | NA | gills (Petrochromis famula, male, SAMN12247959) | 8,776,600 | 74% | 21% | 172,079 |
SAMN12247960 | NA | lower pharyngeal jaw (Petrochromis famula, male, SAMN12247960) | 12,459,995 | 33% | 25% | 150,104 |
SAMN12247961 | NA | brain (Petrochromis famula, male, SAMN12247961) | 9,042,976 | 74% | 14% | 162,669 |
SAMN12247962 | NA | gonads (Petrochromis fasciolatus, female, SAMN12247962) | 13,756,960 | 91% | 38% | 167,346 |
SAMN12247963 | NA | liver (Petrochromis fasciolatus, female, SAMN12247963) | 9,321,756 | 48% | 31% | 100,221 |
SAMN12247964 | NA | gills (Petrochromis fasciolatus, female, SAMN12247964) | 10,498,560 | 73% | 22% | 180,502 |
SAMN12247965 | NA | lower pharyngeal jaw (Petrochromis fasciolatus, female, SAMN12247965) | 8,476,010 | 76% | 27% | 172,882 |
SAMN12247966 | NA | brain (Petrochromis fasciolatus, female, SAMN12247966) | 14,117,060 | 79% | 16% | 188,778 |
SAMN12247967 | NA | liver (Petrochromis fasciolatus, female, SAMN12247967) | 19,458,722 | 53% | 28% | 120,981 |
SAMN12247968 | NA | gonads (Petrochromis fasciolatus, female, SAMN12247968) | 8,289,004 | 88% | 37% | 158,786 |
SAMN12247969 | NA | gills (Petrochromis fasciolatus, female, SAMN12247969) | 12,169,681 | 74% | 25% | 187,874 |
SAMN12247970 | NA | lower pharyngeal jaw (Petrochromis fasciolatus, female, SAMN12247970) | 10,479,307 | 46% | 27% | 161,956 |
SAMN12247971 | NA | brain (Petrochromis fasciolatus, female, SAMN12247971) | 27,539,248 | 77% | 12% | 207,586 |
SAMN12247972 | NA | liver (Petrochromis fasciolatus, male, SAMN12247972) | 8,731,627 | 52% | 28% | 96,236 |
SAMN12247997 | NA | gonads (Pseudosimochromis babaulti, female, SAMN12247997) | 9,412,724 | 88% | 37% | 170,545 |
SAMN12247998 | NA | gills (Pseudosimochromis babaulti, female, SAMN12247998) | 18,844,785 | 77% | 21% | 199,449 |
SAMN12247999 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, female, SAMN12247999) | 10,783,726 | 67% | 24% | 182,479 |
SAMN12248000 | NA | brain (Pseudosimochromis babaulti, female, SAMN12248000) | 10,217,320 | 83% | 14% | 172,047 |
SAMN12248001 | NA | gonads (Pseudosimochromis babaulti, male, SAMN12248001) | 10,375,577 | 77% | 28% | 190,612 |
SAMN12248002 | NA | liver (Pseudosimochromis babaulti, male, SAMN12248002) | 14,961,927 | 66% | 36% | 121,771 |
SAMN12248003 | NA | gills (Pseudosimochromis babaulti, male, SAMN12248003) | 8,223,176 | 77% | 21% | 169,209 |
SAMN12248004 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, male, SAMN12248004) | 9,971,014 | 80% | 24% | 178,690 |
SAMN12248005 | NA | brain (Pseudosimochromis babaulti, male, SAMN12248005) | 10,822,279 | 82% | 16% | 179,092 |
SAMN12248006 | NA | gonads (Pseudosimochromis babaulti, female, SAMN12248006) | 10,568,822 | 85% | 32% | 184,149 |
SAMN12248007 | NA | liver (Pseudosimochromis babaulti, female, SAMN12248007) | 8,861,549 | 78% | 44% | 97,034 |
SAMN12248008 | NA | gills (Pseudosimochromis babaulti, female, SAMN12248008) | 10,516,384 | 78% | 20% | 184,400 |
SAMN12248009 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, female, SAMN12248009) | 16,296,397 | 83% | 24% | 194,575 |
SAMN12248010 | NA | brain (Pseudosimochromis babaulti, female, SAMN12248010) | 9,968,321 | 81% | 15% | 173,140 |
SAMN12248011 | NA | gonads (Pseudosimochromis babaulti, male, SAMN12248011) | 9,071,127 | 81% | 25% | 189,575 |
SAMN12248012 | NA | liver (Pseudosimochromis babaulti, male, SAMN12248012) | 9,276,693 | 79% | 38% | 122,324 |
SAMN12248013 | NA | gills (Pseudosimochromis babaulti, male, SAMN12248013) | 11,573,033 | 73% | 22% | 186,053 |
SAMN12248014 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, male, SAMN12248014) | 9,738,850 | 75% | 23% | 177,241 |
SAMN12248015 | NA | brain (Pseudosimochromis babaulti, male, SAMN12248015) | 12,787,375 | 83% | 14% | 183,195 |
SAMN12248016 | NA | gonads (Pseudosimochromis babaulti, female, SAMN12248016) | 8,324,519 | 75% | 35% | 168,003 |
SAMN12248017 | NA | liver (Pseudosimochromis babaulti, female, SAMN12248017) | 10,517,384 | 60% | 38% | 116,162 |
SAMN12248018 | NA | gills (Pseudosimochromis babaulti, female, SAMN12248018) | 8,603,375 | 71% | 24% | 173,668 |
SAMN12248019 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, female, SAMN12248019) | 9,080,047 | 76% | 30% | 179,277 |
SAMN12248020 | NA | brain (Pseudosimochromis babaulti, female, SAMN12248020) | 10,682,270 | 80% | 13% | 174,413 |
SAMN12248206 | NA | gonads (Petrochromis fasciolatus, male, SAMN12248206) | 13,121,643 | 67% | 21% | 195,688 |
SAMN12248207 | NA | gills (Petrochromis fasciolatus, male, SAMN12248207) | 13,933,062 | 77% | 24% | 194,299 |
SAMN12248208 | NA | lower pharyngeal jaw (Petrochromis fasciolatus, male, SAMN12248208) | 9,968,608 | 62% | 23% | 170,270 |
SAMN12248209 | NA | brain (Petrochromis fasciolatus, male, SAMN12248209) | 9,435,599 | 75% | 15% | 171,149 |
SAMN12248210 | NA | liver (Petrochromis fasciolatus, female, SAMN12248210) | 10,003,161 | 54% | 28% | 104,574 |
SAMN12248211 | NA | gonads (Petrochromis fasciolatus, female, SAMN12248211) | 10,827,808 | 91% | 37% | 160,124 |
SAMN12248212 | NA | gills (Petrochromis fasciolatus, female, SAMN12248212) | 9,231,795 | 75% | 22% | 173,294 |
SAMN12248213 | NA | lower pharyngeal jaw (Petrochromis fasciolatus, female, SAMN12248213) | 9,142,684 | 69% | 28% | 175,116 |
SAMN12248214 | NA | brain (Petrochromis fasciolatus, female, SAMN12248214) | 10,050,949 | 81% | 12% | 168,607 |
SAMN12248215 | NA | liver (Petrochromis fasciolatus, male, SAMN12248215) | 9,450,956 | 80% | 36% | 118,293 |
SAMN12248216 | NA | gonads (Petrochromis fasciolatus, male, SAMN12248216) | 29,012,449 | 82% | 21% | 235,396 |
SAMN12248217 | NA | gills (Petrochromis fasciolatus, male, SAMN12248217) | 15,386,160 | 73% | 21% | 194,571 |
SAMN12248218 | NA | lower pharyngeal jaw (Petrochromis fasciolatus, male, SAMN12248218) | 10,809,597 | 67% | 23% | 178,275 |
SAMN12248219 | NA | brain (Petrochromis fasciolatus, male, SAMN12248219) | 8,665,323 | 75% | 13% | 164,651 |
SAMN12248220 | NA | liver (Petrochromis fasciolatus, male, SAMN12248220) | 12,994,700 | 32% | 19% | 76,543 |
SAMN12248221 | NA | gonads (Petrochromis fasciolatus, male, SAMN12248221) | 11,532,376 | 85% | 28% | 214,348 |
SAMN12248222 | NA | lower pharyngeal jaw (Petrochromis fasciolatus, male, SAMN12248222) | 12,065,822 | 64% | 28% | 185,314 |
SAMN12248223 | NA | brain (Petrochromis fasciolatus, male, SAMN12248223) | 10,074,007 | 83% | 13% | 164,135 |
SAMN12248224 | NA | liver (Petrochromis macrognathus, female, SAMN12248224) | 18,027,151 | 48% | 20% | 100,701 |
SAMN12248225 | NA | gonads (Petrochromis macrognathus, female, SAMN12248225) | 13,286,319 | 89% | 37% | 179,554 |
SAMN12248226 | NA | gills (Petrochromis macrognathus, female, SAMN12248226) | 10,117,080 | 65% | 19% | 170,683 |
SAMN12248227 | NA | lower pharyngeal jaw (Petrochromis macrognathus, female, SAMN12248227) | 10,906,031 | 71% | 26% | 179,883 |
SAMN12248228 | NA | brain (Petrochromis macrognathus, female, SAMN12248228) | 13,101,449 | 82% | 14% | 182,508 |
SAMN12248229 | NA | liver (Petrochromis macrognathus, male, SAMN12248229) | 7,779,121 | 13% | 30% | 23,444 |
SAMN12248230 | NA | gonads (Petrochromis macrognathus, male, SAMN12248230) | 9,054,754 | 77% | 22% | 199,425 |
SAMN12248231 | NA | gills (Petrochromis macrognathus, male, SAMN12248231) | 11,889,551 | 76% | 20% | 180,681 |
SAMN12248232 | NA | lower pharyngeal jaw (Petrochromis macrognathus, male, SAMN12248232) | 9,732,883 | 68% | 24% | 174,330 |
SAMN12248233 | NA | brain (Petrochromis macrognathus, male, SAMN12248233) | 10,107,189 | 82% | 14% | 176,055 |
SAMN12248234 | NA | liver (Petrochromis macrognathus, male, SAMN12248234) | 8,521,366 | 28% | 33% | 58,760 |
SAMN12248235 | NA | gonads (Petrochromis macrognathus, male, SAMN12248235) | 8,544,584 | 77% | 27% | 185,472 |
SAMN12248236 | NA | gills (Petrochromis macrognathus, male, SAMN12248236) | 9,010,423 | 18% | 4% | 39,065 |
SAMN12248237 | NA | lower pharyngeal jaw (Petrochromis macrognathus, male, SAMN12248237) | 10,556,308 | 41% | 28% | 158,505 |
SAMN12248238 | NA | brain (Petrochromis macrognathus, male, SAMN12248238) | 9,556,646 | 79% | 14% | 169,520 |
SAMN12248239 | NA | gonads (Petrochromis macrognathus, male, SAMN12248239) | 8,362,777 | 82% | 30% | 192,936 |
SAMN12248240 | NA | gills (Petrochromis macrognathus, male, SAMN12248240) | 9,730,741 | 54% | 20% | 162,075 |
SAMN12248241 | NA | lower pharyngeal jaw (Petrochromis macrognathus, male, SAMN12248241) | 11,696,405 | 64% | 30% | 176,750 |
SAMN12248242 | NA | brain (Petrochromis macrognathus, male, SAMN12248242) | 10,417,967 | 74% | 15% | 171,280 |
SAMN12248243 | NA | liver (Petrochromis macrognathus, female, SAMN12248243) | 8,570,193 | 20% | 17% | 43,810 |
SAMN12248244 | NA | gonads (Petrochromis macrognathus, female, SAMN12248244) | 13,122,000 | 87% | 37% | 169,876 |
SAMN12248245 | NA | gills (Petrochromis macrognathus, female, SAMN12248245) | 7,771,744 | 50% | 22% | 142,757 |
SAMN12248246 | NA | lower pharyngeal jaw (Petrochromis macrognathus, female, SAMN12248246) | 9,098,023 | 66% | 25% | 169,800 |
SAMN12248247 | NA | brain (Petrochromis macrognathus, female, SAMN12248247) | 9,779,648 | 75% | 13% | 164,968 |
SAMN12248248 | NA | liver (Petrochromis macrognathus, female, SAMN12248248) | 9,209,232 | 12% | 17% | 22,644 |
SAMN12248249 | NA | gonads (Petrochromis macrognathus, female, SAMN12248249) | 10,262,432 | 77% | 31% | 183,264 |
SAMN12248250 | NA | gills (Petrochromis macrognathus, female, SAMN12248250) | 12,900,537 | 73% | 17% | 173,689 |
SAMN12248251 | NA | lower pharyngeal jaw (Petrochromis macrognathus, female, SAMN12248251) | 9,052,374 | 55% | 23% | 164,160 |
SAMN12248252 | NA | brain (Petrochromis macrognathus, female, SAMN12248252) | 14,800,944 | 63% | 13% | 173,440 |
SAMN12248253 | NA | liver (Petrochromis polyodon, female, SAMN12248253) | 9,656,088 | 25% | 19% | 60,351 |
SAMN12248254 | NA | gonads (Petrochromis polyodon, female, SAMN12248254) | 12,802,571 | 84% | 38% | 169,166 |
SAMN12248255 | NA | gills (Petrochromis polyodon, female, SAMN12248255) | 8,091,941 | 72% | 22% | 164,438 |
SAMN12248256 | NA | lower pharyngeal jaw (Petrochromis polyodon, female, SAMN12248256) | 11,411,234 | 51% | 26% | 169,684 |
SAMN12248257 | NA | brain (Petrochromis polyodon, female, SAMN12248257) | 13,274,536 | 74% | 12% | 176,686 |
SAMN12248258 | NA | liver (Petrochromis polyodon, female, SAMN12248258) | 8,775,581 | 42% | 33% | 77,264 |
SAMN12248259 | NA | gonads (Petrochromis polyodon, female, SAMN12248259) | 11,597,406 | 86% | 37% | 169,771 |
SAMN12248260 | NA | gills (Petrochromis polyodon, female, SAMN12248260) | 9,390,841 | 63% | 22% | 159,285 |
SAMN12248261 | NA | lower pharyngeal jaw (Petrochromis polyodon, female, SAMN12248261) | 7,957,911 | 65% | 25% | 162,629 |
SAMN12248262 | NA | brain (Petrochromis polyodon, female, SAMN12248262) | 8,168,407 | 77% | 14% | 164,241 |
SAMN12248263 | NA | liver (Petrochromis polyodon, female, SAMN12248263) | 12,062,092 | 65% | 37% | 115,728 |
SAMN12248264 | NA | gonads (Petrochromis polyodon, female, SAMN12248264) | 14,456,321 | 89% | 39% | 168,517 |
SAMN12248265 | NA | gills (Petrochromis polyodon, female, SAMN12248265) | 12,708,664 | 73% | 22% | 184,128 |
SAMN12248266 | NA | lower pharyngeal jaw (Petrochromis polyodon, female, SAMN12248266) | 13,075,374 | 73% | 26% | 190,265 |
SAMN12248267 | NA | brain (Petrochromis polyodon, female, SAMN12248267) | 11,225,754 | 77% | 16% | 184,820 |
SAMN12248268 | NA | liver (Petrochromis polyodon, male, SAMN12248268) | 8,605,908 | 64% | 33% | 117,803 |
SAMN12248269 | NA | gonads (Petrochromis polyodon, male, SAMN12248269) | 8,372,259 | 75% | 24% | 183,887 |
SAMN12248270 | NA | gills (Petrochromis polyodon, male, SAMN12248270) | 9,513,521 | 71% | 19% | 168,814 |
SAMN12248271 | NA | lower pharyngeal jaw (Petrochromis polyodon, male, SAMN12248271) | 10,919,724 | 62% | 25% | 175,756 |
SAMN12248272 | NA | brain (Petrochromis polyodon, male, SAMN12248272) | 12,351,429 | 77% | 13% | 181,211 |
SAMN12248273 | NA | liver (Petrochromis polyodon, male, SAMN12248273) | 8,408,399 | 47% | 32% | 92,931 |
SAMN12248274 | NA | gonads (Petrochromis polyodon, male, SAMN12248274) | 11,173,305 | 67% | 23% | 186,053 |
SAMN12248275 | NA | gills (Petrochromis polyodon, male, SAMN12248275) | 9,710,332 | 52% | 18% | 145,808 |
SAMN12248276 | NA | lower pharyngeal jaw (Petrochromis polyodon, male, SAMN12248276) | 10,070,558 | 57% | 23% | 162,855 |
SAMN12248277 | NA | brain (Petrochromis polyodon, male, SAMN12248277) | 10,838,272 | 64% | 12% | 163,244 |
SAMN12248278 | NA | liver (Petrochromis polyodon, male, SAMN12248278) | 5,740,605 | 44% | 35% | 76,399 |
SAMN12248279 | NA | gonads (Petrochromis polyodon, male, SAMN12248279) | 8,111,577 | 79% | 26% | 178,499 |
SAMN12248280 | NA | gills (Petrochromis polyodon, male, SAMN12248280) | 8,658,588 | 76% | 23% | 173,069 |
SAMN12248281 | NA | lower pharyngeal jaw (Petrochromis polyodon, male, SAMN12248281) | 10,742,607 | 64% | 26% | 176,050 |
SAMN12248282 | NA | brain (Petrochromis polyodon, male, SAMN12248282) | 13,296,369 | 66% | 13% | 178,106 |
SAMN12248342 | NA | gills (Pseudosimochromis babaulti, male, SAMN12248342) | 9,473,910 | 81% | 23% | 179,216 |
SAMN12248343 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, male, SAMN12248343) | 12,940,763 | 78% | 26% | 191,982 |
SAMN12248344 | NA | liver (Pseudosimochromis babaulti, male, SAMN12248344) | 8,838,703 | 46% | 19% | 127,853 |
SAMN12248345 | NA | gonads (Pseudosimochromis babaulti, male, SAMN12248345) | 10,188,815 | 80% | 29% | 191,414 |
SAMN12248346 | NA | brain (Pseudosimochromis babaulti, male, SAMN12248346) | 10,956,339 | 79% | 16% | 187,421 |
SAMN12248347 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, male, SAMN12248347) | 8,142,386 | 77% | 25% | 172,236 |
SAMN12248348 | NA | liver (Pseudosimochromis babaulti, male, SAMN12248348) | 8,947,112 | 77% | 36% | 129,688 |
SAMN12248349 | NA | gonads (Pseudosimochromis babaulti, male, SAMN12248349) | 8,257,858 | 76% | 29% | 184,246 |
SAMN12248350 | NA | brain (Pseudosimochromis babaulti, male, SAMN12248350) | 9,309,016 | 80% | 14% | 168,754 |
SAMN12248351 | NA | gills (Pseudosimochromis babaulti, male, SAMN12248351) | 9,950,721 | 81% | 25% | 180,508 |
SAMN12248352 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, male, SAMN12248352) | 10,218,180 | 80% | 26% | 181,224 |
SAMN12248353 | NA | liver (Pseudosimochromis babaulti, male, SAMN12248353) | 9,209,575 | 78% | 36% | 110,917 |
SAMN12248354 | NA | gonads (Pseudosimochromis babaulti, male, SAMN12248354) | 18,029,933 | 76% | 29% | 212,169 |
SAMN12248355 | NA | brain (Pseudosimochromis babaulti, male, SAMN12248355) | 9,555,346 | 80% | 15% | 170,327 |
SAMN12248356 | NA | gills (Pseudosimochromis babaulti, female, SAMN12248356) | 11,358,005 | 76% | 23% | 187,374 |
SAMN12248357 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, female, SAMN12248357) | 15,047,276 | 78% | 24% | 191,031 |
SAMN12248358 | NA | liver (Pseudosimochromis babaulti, female, SAMN12248358) | 10,441,670 | 74% | 37% | 108,764 |
SAMN12248359 | NA | gonads (Pseudosimochromis babaulti, female, SAMN12248359) | 9,979,147 | 87% | 36% | 169,487 |
SAMN12248360 | NA | brain (Pseudosimochromis babaulti, female, SAMN12248360) | 9,075,864 | 82% | 15% | 171,145 |
SAMN12248361 | NA | gills (Pseudosimochromis babaulti, female, SAMN12248361) | 11,507,589 | 78% | 23% | 184,400 |
SAMN12248362 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, female, SAMN12248362) | 11,187,391 | 67% | 27% | 183,293 |
SAMN12248363 | NA | liver (Pseudosimochromis babaulti, female, SAMN12248363) | 9,045,830 | 75% | 34% | 105,054 |
SAMN12248364 | NA | gonads (Pseudosimochromis babaulti, female, SAMN12248364) | 13,842,779 | 89% | 36% | 176,241 |
SAMN12248365 | NA | brain (Pseudosimochromis babaulti, female, SAMN12248365) | 10,145,521 | 77% | 16% | 172,684 |
SAMN12248366 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, female, SAMN12248366) | 10,694,888 | 23% | 16% | 89,502 |
SAMN12248367 | NA | gills (Pseudosimochromis babaulti, female, SAMN12248367) | 9,802,148 | 71% | 22% | 179,183 |
SAMN12248368 | NA | liver (Pseudosimochromis babaulti, female, SAMN12248368) | 9,783,546 | 80% | 41% | 99,730 |
SAMN12248369 | NA | gonads (Pseudosimochromis babaulti, female, SAMN12248369) | 9,909,516 | 85% | 34% | 171,889 |
SAMN12248370 | NA | brain (Pseudosimochromis babaulti, female, SAMN12248370) | 11,357,743 | 81% | 15% | 180,897 |
SAMN12248371 | NA | liver (Simochromis diagramma, male, SAMN12248371) | 19,466,455 | 83% | 36% | 136,811 |
SAMN12248372 | NA | gonads (Simochromis diagramma, male, SAMN12248372) | 9,989,684 | 84% | 24% | 197,626 |
SAMN12248373 | NA | gills (Simochromis diagramma, male, SAMN12248373) | 13,363,413 | 71% | 23% | 191,838 |
SAMN12248374 | NA | lower pharyngeal jaw (Simochromis diagramma, male, SAMN12248374) | 8,820,364 | 78% | 26% | 172,058 |
SAMN12248375 | NA | brain (Simochromis diagramma, male, SAMN12248375) | 10,126,763 | 80% | 13% | 167,846 |
SAMN12248376 | NA | liver (Simochromis diagramma, male, SAMN12248376) | 8,849,278 | 68% | 32% | 104,082 |
SAMN12248377 | NA | gonads (Simochromis diagramma, male, SAMN12248377) | 9,774,643 | 79% | 24% | 188,387 |
SAMN12248378 | NA | gills (Simochromis diagramma, male, SAMN12248378) | 13,471,915 | 78% | 24% | 190,335 |
SAMN12248379 | NA | lower pharyngeal jaw (Simochromis diagramma, male, SAMN12248379) | 7,341,258 | 74% | 28% | 164,974 |
SAMN12248380 | NA | brain (Simochromis diagramma, male, SAMN12248380) | 10,134,517 | 80% | 14% | 171,247 |
SAMN12248381 | NA | liver (Simochromis diagramma, male, SAMN12248381) | 10,718,334 | 18% | 11% | 36,426 |
SAMN12248382 | NA | gonads (Simochromis diagramma, male, SAMN12248382) | 10,749,449 | 65% | 29% | 181,724 |
SAMN12248383 | NA | gills (Simochromis diagramma, male, SAMN12248383) | 10,077,874 | 73% | 21% | 174,799 |
SAMN12248384 | NA | lower pharyngeal jaw (Simochromis diagramma, male, SAMN12248384) | 8,783,308 | 73% | 26% | 167,415 |
SAMN12248385 | NA | brain (Simochromis diagramma, male, SAMN12248385) | 10,009,842 | 67% | 15% | 164,096 |
SAMN12248386 | NA | liver (Simochromis diagramma, female, SAMN12248386) | 10,001,176 | 66% | 35% | 112,552 |
SAMN12248387 | NA | gonads (Simochromis diagramma, female, SAMN12248387) | 8,725,690 | 84% | 39% | 160,625 |
SAMN12248388 | NA | gills (Simochromis diagramma, female, SAMN12248388) | 8,802,733 | 73% | 20% | 169,825 |
SAMN12248389 | NA | lower pharyngeal jaw (Simochromis diagramma, female, SAMN12248389) | 9,584,416 | 71% | 27% | 177,043 |
SAMN12248390 | NA | brain (Simochromis diagramma, female, SAMN12248390) | 25,598,678 | 84% | 13% | 202,460 |
SAMN12248391 | NA | liver (Simochromis diagramma, female, SAMN12248391) | 12,055,333 | 71% | 39% | 137,075 |
SAMN12248392 | NA | gonads (Simochromis diagramma, female, SAMN12248392) | 8,823,180 | 89% | 37% | 167,215 |
SAMN12248393 | NA | gills (Simochromis diagramma, female, SAMN12248393) | 10,230,513 | 80% | 21% | 184,646 |
SAMN12248394 | NA | lower pharyngeal jaw (Simochromis diagramma, female, SAMN12248394) | 10,023,677 | 79% | 25% | 186,191 |
SAMN12248395 | NA | brain (Simochromis diagramma, female, SAMN12248395) | 8,452,591 | 77% | 17% | 168,866 |
SAMN12248396 | NA | gonads (Simochromis diagramma, female, SAMN12248396) | 13,883,889 | 90% | 37% | 175,336 |
SAMN12248397 | NA | gills (Simochromis diagramma, female, SAMN12248397) | 11,736,019 | 72% | 24% | 184,421 |
SAMN12248398 | NA | lower pharyngeal jaw (Simochromis diagramma, female, SAMN12248398) | 21,624,569 | 82% | 25% | 201,662 |
SAMN12248399 | NA | brain (Simochromis diagramma, female, SAMN12248399) | 9,902,613 | 81% | 17% | 170,943 |
SAMN12248400 | NA | liver (Pseudosimochromis babaulti, male, SAMN12248400) | 11,055,933 | 79% | 36% | 122,166 |
SAMN12248401 | NA | gonads (Pseudosimochromis babaulti, male, SAMN12248401) | 9,736,230 | 83% | 29% | 189,056 |
SAMN12248402 | NA | gills (Pseudosimochromis babaulti, male, SAMN12248402) | 9,925,332 | 75% | 22% | 178,116 |
SAMN12248403 | NA | lower pharyngeal jaw (Pseudosimochromis babaulti, male, SAMN12248403) | 9,832,734 | 76% | 28% | 183,459 |
SAMN12248404 | NA | brain (Pseudosimochromis babaulti, male, SAMN12248404) | 10,224,816 | 79% | 15% | 176,606 |
SAMN12248405 | NA | liver (Pseudosimochromis babaulti, female, SAMN12248405) | 10,999,240 | 67% | 39% | 117,789 |
SAMN12248464 | NA | gonads (Tropheus moorii, male, SAMN12248464) | 9,584,955 | 75% | 22% | 183,781 |
SAMN12248465 | NA | gills (Tropheus moorii, male, SAMN12248465) | 9,426,333 | 57% | 21% | 163,957 |
SAMN12248466 | NA | lower pharyngeal jaw (Tropheus moorii, male, SAMN12248466) | 12,887,409 | 58% | 26% | 180,102 |
SAMN12248467 | NA | brain (Tropheus moorii, male, SAMN12248467) | 11,059,331 | 80% | 15% | 179,415 |
SAMN12248468 | NA | liver (Tropheus moorii, female, SAMN12248468) | 9,879,758 | 56% | 32% | 98,020 |
SAMN12248469 | NA | gonads (Tropheus moorii, female, SAMN12248469) | 9,063,270 | 86% | 38% | 168,674 |
SAMN12248470 | NA | gills (Tropheus moorii, female, SAMN12248470) | 9,330,268 | 68% | 19% | 172,385 |
SAMN12248471 | NA | lower pharyngeal jaw (Tropheus moorii, female, SAMN12248471) | 12,885,757 | 73% | 27% | 190,668 |
SAMN12248472 | NA | brain (Tropheus moorii, female, SAMN12248472) | 27,417,102 | 80% | 12% | 208,542 |
SAMN12248473 | NA | liver (Tropheus moorii, male, SAMN12248473) | 7,570,359 | 51% | 32% | 92,803 |
SAMN12248474 | NA | gonads (Tropheus moorii, male, SAMN12248474) | 8,799,948 | 79% | 24% | 180,515 |
SAMN12248475 | NA | gills (Tropheus moorii, male, SAMN12248475) | 9,861,269 | 73% | 25% | 184,468 |
SAMN12248476 | NA | lower pharyngeal jaw (Tropheus moorii, male, SAMN12248476) | 9,957,392 | 72% | 25% | 181,984 |
SAMN12248477 | NA | brain (Tropheus moorii, male, SAMN12248477) | 8,664,879 | 80% | 16% | 174,217 |
SAMN12248478 | NA | liver (Tropheus moorii, male, SAMN12248478) | 12,849,923 | 33% | 27% | 94,770 |
SAMN12248479 | NA | gonads (Tropheus moorii, male, SAMN12248479) | 7,689,098 | 73% | 26% | 171,957 |
SAMN12248480 | NA | gills (Tropheus moorii, male, SAMN12248480) | 10,562,988 | 70% | 20% | 176,437 |
SAMN12248481 | NA | lower pharyngeal jaw (Tropheus moorii, male, SAMN12248481) | 30,600,204 | 74% | 25% | 218,140 |
SAMN12248482 | NA | brain (Tropheus moorii, male, SAMN12248482) | 11,571,556 | 69% | 13% | 171,132 |
SAMN12248483 | NA | liver (Tropheus moorii, female, SAMN12248483) | 9,523,177 | 60% | 34% | 105,898 |
SAMN12248484 | NA | gonads (Tropheus moorii, female, SAMN12248484) | 8,586,093 | 78% | 35% | 175,674 |
SAMN12248485 | NA | gills (Tropheus moorii, female, SAMN12248485) | 9,857,081 | 82% | 21% | 180,765 |
SAMN12248486 | NA | lower pharyngeal jaw (Tropheus moorii, female, SAMN12248486) | 15,865,618 | 70% | 24% | 195,903 |
SAMN12248487 | NA | brain (Tropheus moorii, female, SAMN12248487) | 9,587,765 | 80% | 15% | 174,265 |
SAMN12248488 | NA | liver (Tropheus moorii, female, SAMN12248488) | 16,881,350 | 69% | 33% | 139,323 |
SAMN12248489 | NA | gonads (Tropheus moorii, female, SAMN12248489) | 10,482,546 | 92% | 37% | 167,028 |
SAMN12248490 | NA | gills (Tropheus moorii, female, SAMN12248490) | 8,771,384 | 71% | 25% | 179,681 |
SAMN12248491 | NA | lower pharyngeal jaw (Tropheus moorii, female, SAMN12248491) | 9,469,304 | 69% | 24% | 178,401 |
SAMN12248492 | NA | brain (Tropheus moorii, female, SAMN12248492) | 8,992,050 | 82% | 18% | 173,562 |
SAMN12248493 | NA | gills (Tropheus sp. 'black', female, SAMN12248493) | 8,857,895 | 79% | 23% | 181,123 |
SAMN12248494 | NA | gonads (Tropheus sp. 'black', female, SAMN12248494) | 12,134,497 | 90% | 36% | 168,521 |
SAMN12248495 | NA | lower pharyngeal jaw (Tropheus sp. 'black', female, SAMN12248495) | 12,339,932 | 79% | 24% | 190,346 |
SAMN12248496 | NA | liver (Tropheus sp. 'black', female, SAMN12248496) | 9,219,193 | 80% | 37% | 119,771 |
SAMN12248497 | NA | brain (Tropheus sp. 'black', female, SAMN12248497) | 10,019,437 | 82% | 12% | 168,360 |
SAMN12248498 | NA | gills (Tropheus sp. 'black', male, SAMN12248498) | 9,718,090 | 74% | 23% | 180,913 |
SAMN12248499 | NA | lower pharyngeal jaw (Tropheus sp. 'black', male, SAMN12248499) | 11,007,238 | 72% | 25% | 182,313 |
SAMN12248500 | NA | liver (Tropheus sp. 'black', male, SAMN12248500) | 17,055,715 | 76% | 34% | 137,182 |
SAMN12248501 | NA | gonads (Tropheus sp. 'black', male, SAMN12248501) | 9,872,987 | 71% | 27% | 185,624 |
SAMN12248502 | NA | brain (Tropheus sp. 'black', male, SAMN12248502) | 9,157,825 | 83% | 16% | 171,109 |
SAMN12248503 | NA | gills (Tropheus sp. 'black', male, SAMN12248503) | 8,907,402 | 74% | 21% | 175,484 |
SAMN12248504 | NA | lower pharyngeal jaw (Tropheus sp. 'black', male, SAMN12248504) | 8,780,693 | 61% | 26% | 168,464 |
SAMN12248505 | NA | liver (Tropheus sp. 'black', male, SAMN12248505) | 18,621 | 46% | 19% | 1,821 |
SAMN12248506 | NA | gonads (Tropheus sp. 'black', male, SAMN12248506) | 9,158,684 | 78% | 22% | 180,374 |
SAMN12248507 | NA | brain (Tropheus sp. 'black', male, SAMN12248507) | 9,966,319 | 74% | 16% | 173,702 |
SAMN12248508 | NA | gills (Tropheus sp. 'black', male, SAMN12248508) | 9,644,325 | 77% | 24% | 185,350 |
SAMN12248509 | NA | lower pharyngeal jaw (Tropheus sp. 'black', male, SAMN12248509) | 11,739,105 | 81% | 27% | 191,765 |
SAMN12248510 | NA | liver (Tropheus sp. 'black', male, SAMN12248510) | 9,239,860 | 78% | 34% | 116,529 |
SAMN12248511 | NA | gonads (Tropheus sp. 'black', male, SAMN12248511) | 14,758,853 | 83% | 25% | 208,629 |
SAMN12248512 | NA | brain (Tropheus sp. 'black', male, SAMN12248512) | 7,983,742 | 82% | 15% | 168,057 |
SAMN12248513 | NA | gills (Tropheus sp. 'black', female, SAMN12248513) | 15,996,857 | 77% | 21% | 198,339 |
SAMN12248514 | NA | lower pharyngeal jaw (Tropheus sp. 'black', female, SAMN12248514) | 9,719,547 | 74% | 26% | 176,727 |
SAMN12248515 | NA | liver (Tropheus sp. 'black', female, SAMN12248515) | 8,842,048 | 74% | 35% | 108,821 |
SAMN12248516 | NA | gonads (Tropheus sp. 'black', female, SAMN12248516) | 16,661,884 | 89% | 36% | 187,308 |
SAMN12248517 | NA | brain (Tropheus sp. 'black', female, SAMN12248517) | 10,089,213 | 81% | 14% | 168,864 |
SAMN12248518 | NA | gills (Tropheus sp. 'black', female, SAMN12248518) | 9,641,584 | 82% | 21% | 178,888 |
SAMN12248519 | NA | lower pharyngeal jaw (Tropheus sp. 'black', female, SAMN12248519) | 8,675,343 | 59% | 23% | 164,979 |
SAMN12248520 | NA | liver (Tropheus sp. 'black', female, SAMN12248520) | 7,780,622 | 34% | 24% | 78,145 |
SAMN12248521 | NA | gonads (Tropheus sp. 'black', female, SAMN12248521) | 8,962,621 | 87% | 37% | 157,991 |
SAMN12248522 | NA | brain (Tropheus sp. 'black', female, SAMN12248522) | 9,374,991 | 80% | 15% | 169,572 |
SAMN15293913 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Limnotilapia dardennii, SAMN15293913) | 13,397,532 | 92% | 43% | 154,939 |
SAMN15293914 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Limnotilapia dardennii, SAMN15293914) | 11,760,242 | 90% | 47% | 180,979 |
SAMN15293915 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Limnotilapia dardennii, SAMN15293915) | 17,060,924 | 90% | 40% | 199,607 |
SAMN15293916 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Limnotilapia dardennii, SAMN15293916) | 21,957,004 | 92% | 40% | 212,113 |
SAMN15293917 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Tropheus duboisi, SAMN15293917) | 26,689,920 | 93% | 41% | 211,909 |
SAMN15293918 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Tropheus duboisi, SAMN15293918) | 21,530,340 | 93% | 41% | 207,391 |
SAMN15293919 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Tropheus duboisi, SAMN15293919) | 19,856,586 | 93% | 43% | 201,539 |
SAMN15293920 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Tropheus duboisi, SAMN15293920) | 41,151,274 | 92% | 39% | 230,201 |
SAMN15293921 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Simochromis diagramma, SAMN15293921) | 13,326,376 | 92% | 32% | 177,261 |
SAMN15293922 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Simochromis diagramma, SAMN15293922) | 21,280,234 | 92% | 30% | 182,072 |
SAMN15293923 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Simochromis diagramma, SAMN15293923) | 18,934,684 | 92% | 32% | 189,312 |
SAMN15293924 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Simochromis diagramma, SAMN15293924) | 20,751,246 | 92% | 31% | 190,494 |
SAMN15293925 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Simochromis diagramma, SAMN15293925) | 18,640,056 | 92% | 31% | 183,798 |
SAMN15293926 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Tropheus moorii, SAMN15293926) | 10,847,780 | 88% | 32% | 155,693 |
SAMN15293927 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Tropheus moorii, SAMN15293927) | 21,933,908 | 92% | 33% | 198,516 |
SAMN15293928 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Tropheus moorii, SAMN15293928) | 12,830,212 | 93% | 31% | 178,519 |
SAMN15293934 | 29036566 | lower suspensorium (oral jaws + lower pharyngeal jaw) (Tropheus moorii, SAMN15293934) | 29,873,128 | 91% | 33% | 205,634 |
SAMN15890893 | NA | skin (Tropheus sp. 'Bulu Point', male, SAMN15890893) | 20,378,018 | 92% | 38% | 177,910 |
SAMN15890894 | NA | skin (Tropheus sp. 'Bulu Point', male, SAMN15890894) | 27,585,344 | 91% | 36% | 183,425 |
SAMN15890895 | NA | skin (Tropheus sp. 'Bulu Point', male, SAMN15890895) | 32,686,486 | 89% | 37% | 185,805 |
SAMN15890896 | NA | skin (Tropheus sp. 'Bulu Point', male, SAMN15890896) | 30,052,424 | 91% | 35% | 186,137 |
SAMN15890897 | NA | skin (Tropheus sp. 'Bulu Point', male, SAMN15890897) | 22,903,938 | 94% | 37% | 179,826 |
SAMN15890898 | NA | skin (Tropheus sp. 'Bulu Point', male, SAMN15890898) | 22,448,486 | 93% | 39% | 176,596 |
SAMN15890899 | NA | skin (Tropheus sp. 'Ikola', male, SAMN15890899) | 30,060,178 | 91% | 37% | 182,674 |
SAMN15890900 | NA | skin (Tropheus sp. 'Ikola', male, SAMN15890900) | 28,221,088 | 91% | 37% | 172,572 |
SAMN15890901 | NA | skin (Tropheus sp. 'Ikola', male, SAMN15890901) | 22,302,024 | 93% | 37% | 179,248 |
SAMN15890902 | NA | skin (Tropheus sp. 'Ikola', male, SAMN15890902) | 24,977,736 | 91% | 37% | 182,219 |
SAMN15890903 | NA | skin (Tropheus sp. 'Ikola', male, SAMN15890903) | 21,074,314 | 93% | 39% | 177,907 |
SAMN15890904 | NA | skin (Tropheus sp. 'Ikola', male, SAMN15890904) | 25,316,912 | 92% | 36% | 189,712 |
SAMN15890905 | NA | skin (Tropheus moorii, male, SAMN15890905) | 27,297,328 | 91% | 35% | 187,595 |
SAMN15890906 | NA | skin (Tropheus moorii, male, SAMN15890906) | 20,839,144 | 91% | 35% | 174,119 |
SAMN15890907 | NA | skin (Tropheus moorii, male, SAMN15890907) | 22,022,056 | 90% | 38% | 184,993 |
SAMN15890908 | NA | skin (Tropheus moorii, male, SAMN15890908) | 22,748,846 | 93% | 39% | 189,869 |
SAMN15890909 | NA | skin (Tropheus moorii, male, SAMN15890909) | 19,494,646 | 94% | 37% | 182,530 |
SAMN15890910 | NA | skin (Tropheus moorii, male, SAMN15890910) | 24,429,418 | 93% | 39% | 192,588 |
SAMN15890911 | NA | skin (Tropheus moorii, male, SAMN15890911) | 26,535,246 | 89% | 35% | 187,591 |
SAMN15890912 | NA | skin (Tropheus moorii, male, SAMN15890912) | 26,449,526 | 91% | 36% | 184,347 |
SAMN15890913 | NA | skin (Tropheus moorii, male, SAMN15890913) | 27,025,902 | 89% | 36% | 190,628 |
SAMN15890914 | NA | skin (Tropheus moorii, male, SAMN15890914) | 34,086,698 | 91% | 37% | 196,393 |
SAMN15890915 | NA | skin (Tropheus moorii, male, SAMN15890915) | 20,585,842 | 94% | 39% | 178,568 |
SAMN15890916 | NA | skin (Tropheus moorii, male, SAMN15890916) | 18,732,122 | 92% | 37% | 179,658 |
Protein alignments
Source | Number of sequences retrieved from Entrez | Number (%) of sequences aligned by ProSplign | Number (%) of sequences passed to Gnomon | Average % identity | Average % coverage |
---|---|---|---|---|---|
Actinopterygii GenBank | 87,282 | 70,928 (81.26%) | 70,928 (81.26%) | 68.40% | 80.14% |
Actinopterygii known RefSeq (NP_) | 25,473 | 6,572 (25.80%) | 6,572 (25.80%) | 66.31% | 75.69% |
Homo sapiens known RefSeq (NP_) | 61,469 | 39,260 (63.87%) | 39,260 (63.87%) | 66.26% | 67.93% |
References
- RefSeq: Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J, Landrum MJ, McGarvey KM, Murphy MR, O'Leary NA, Pujar S, Rajput B, Rangwala SH, Riddick LD, Shkeda A, Sun H, Tamez P, Tully RE, Wallin C, Webb D, Weber J, Wu W, Dicuccio M, Kitts P, Maglott DR, Murphy TD, Ostell JM. Nucleic Acids Research 2014, 42(Database issue):D756-63
- RepeatMasker: Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0. 1996–2004. http://www.repeatmasker.org
- WindowMasker: Morgulis A, Gertz EM, Schäffer AA, Agarwala R. Bioinformatics 2006, 2:134-41
- Splign: Kapustin Y, Souvorov A, Tatusova T, Lipman D. Biology Direct 2008, 3:20
- Minimap2: Li H. Bioinformatics 2018 Sep 15;34(18):3094-3100