Xanthomonas hortorum (ID 11346) - Genome - NCBI

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Xanthomonas hortorum
Representative genome: Xanthomonas hortorum
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ID: 11346

Organism Overview ; Genome Assembly and Annotation report [166] ; Genome Tree report [52] ; Plasmid Annotation Report [30]

Xanthomonas hortorum

Xanthomonas hortorum overview

Lineage: Bacteria[37505]; Pseudomonadota[11106]; Gammaproteobacteria[4596]; Lysobacterales[357]; Lysobacteraceae[253]; Xanthomonas[41]; Xanthomonas hortorum[1]

Xanthomonas hortorum.Xanthomonas hortorum is a bacterial plant pathogen. There are a number of pathovars distinguished on the basis of phytopathogenic specialization.

Summary

Sequence data:

genome assemblies: 166

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 5.20105

median protein count: 4247

median GC%: 63.7

Publications (limited to 20 most recent records)

Whole Genome Sequencing-Based Tracing of a 2022 Introduction and Outbreak of Xanthomonas hortorum pv. pelargonii. Iruegas-Bocardo F, et al. Phytopathology 2023 Jun
Draft Genome Sequences of Pathotype Strains for Three Pathovars Belonging to Three Xanthomonas Species. Michalopoulou VA, et al. Microbiol Resour Announc 2018 Sep
Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity. Schwartz AR, et al. Front Microbiol 2015
Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. Potnis N, et al. BMC Genomics 2011 Mar 11
Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molecular diagnostics. Kimbrel JA, et al. Mol Plant Pathol 2011 Aug

Representative (genome information for reference and representative genomes)

Reference genome:

Xanthomonas hortorum ASM228551v1

Submitter: Agriculture and Agri-Food Canada

Environment: OptimumTemperature: C

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	-	NZ_CP016878.1	CP016878.1	5.18	63.7	4,201	6	53	40	4,447	147

Plsm	pB07007	NZ_CP016879.1	CP016879.1	0.08	59.6	77	-	1	-	97	19

Dendrogram (based on genomic BLAST)

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