Genome

Pseudomonas syringae Plant pathogen Lineage: Bacteria[37515]; Pseudomonadota[11108]; Gammaproteobacteria[4595]; Pseudomonadales[563]; Pseudomonadaceae[467]; Pseudomonas[380]; Pseudomonas syringae group[22]; Pseudomonas syringae group genomosp. 1[1]; Pseudomonas syringae[1]

Pseudomonas. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. In the latter form the single cell can display an extremely high motility due to its polar More...flagella. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Typically they are plant pathogens, although several strains are pathogenic to humans. Pseudomonas syringae. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns. Less...

Summary Sequence data:  genome assemblies: 714; sequence reads: 17  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 6.02473  median protein count: 5131  median GC%: 59 Publications (limited to 20 most recent records) Seedling microbiota engineering using bacterial synthetic community inoculation on seeds. Arnault G, et al. FEMS Microbiol Ecol 2024 Mar 12 In vitro, in planta, and comparative genomic analyses of Pseudomonas syringae pv. syringae strains of pepper (Capsicum annuum var. annuum). Ranjit S, et al. Microbiol Spectr 2024 Jun 4 Complete Genome Sequence of the Ice-Nucleation-Active Pseudomonas syringae Strain MUP20, Isolated from Frost-Damaged Wheat (Triticum aestivum cv. Scepter) in Western Australia. Alattas H, et al. Microbiol Resour Announc 2023 Mar 16 Complete Genome Sequence of the Ice-Nucleation-Active Pseudomonas syringae pv. pisi Isolate MUP32, Isolated from Frost-Damaged Pea (Pisum sativum subsp. arvense cv. Dundale) in New South Wales. Alattas H, et al. Microbiol Resour Announc 2023 Mar 16 Complete Genome Sequence of the Ice-Nucleation-Active Pseudomonas syringae Strain MUP17, Isolated from the Frost-Damaged Barley Cultivar Hordeum vulgare cv. La Trobe. Alattas H, et al. Microbiol Resour Announc 2023 Mar 16 dCas9-BE3 and dCas12a-BE3 Systems Mediated Base Editing in Kiwifruit Canker Causal Agent Pseudomonas syringae pv. actinidiae. Liu B, et al. Int J Mol Sci 2023 Feb 27 Draft Genome Sequence of Pseudomonas syringae RAYR-BL, a Strain Isolated from Natural Accessions of Arabidopsis thaliana Plants. Fuenzalida-Valdivia I, et al. Microbiol Resour Announc 2022 Jan 20 Comparative genomics and genomic diversity of Pseudomonas syringae clade 2b-a in Australia. Djitro N, et al. BMC Microbiol 2022 Nov 21 Draft Genome Resources Sequences of Six Pseudomonas syringae pv. actinidiae Strains Isolated from Actinidia chinensis var. deliciosa Leaves in Portugal. Ares A, et al. Phytopathology 2021 Jan Molecular Characterization and Taxonomic Assignment of Three Phage Isolates from a Collection Infecting Pseudomonas syringae pv. actinidiae and P. syringae pv. phaseolicola from Northern Italy. Martino G, et al. Viruses 2021 Oct 15 Zucchini Vein Clearing Disease Is Caused by Several Lineages Within Pseudomonas syringae Species Complex. Lacault C, et al. Phytopathology 2020 Apr Draft Genome Sequences of 10 Strains of Pseudomonas syringae pv. actinidiae Biovar 1, a Major Kiwifruit Bacterial Canker Pathogen in Japan. Fujikawa T, et al. Microbiol Resour Announc 2020 Aug 27 Temporal dynamics of bacterial communities during seed development and maturation. Chesneau G, et al. FEMS Microbiol Ecol 2020 Nov 26 Draft Genome Sequences of Nine Japanese Strains of the Kiwifruit Bacterial Canker Pathogen Pseudomonas syringae pv. actinidiae Biovar 3. Fujikawa T, et al. Microbiol Resour Announc 2020 Nov 5 The Ptr1 Locus of Solanum lycopersicoides Confers Resistance to Race 1 Strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by Recognizing the Type III Effectors AvrRpt2 and RipBN. Mazo-Molina C, et al. Mol Plant Microbe Interact 2019 Aug Genome analysis of Pseudomonas syringae pv. actinidiae biovar 6, which produces the phytotoxins, phaseolotoxin and coronatine. Fujikawa T, et al. Sci Rep 2019 Mar 7 Comparative genomics reveal pathogenicity-related loci in Pseudomonas syringae pv. actinidiae biovar 3. Zhao Z, et al. Mol Plant Pathol 2019 Jul Origin and Evolution of the Kiwifruit Canker Pandemic. McCann HC, et al. Genome Biol Evol 2017 Apr 1 Similar levels of gene content variation observed for Pseudomonas syringae populations extracted from single and multiple host species. Karasov TL, et al. PLoS One 2017 Genome analysis of the kiwifruit canker pathogen Pseudomonas syringae pv. actinidiae biovar 5. Fujikawa T, et al. Sci Rep 2016 Feb 19 More...  Representative (genome information for reference and representative genomes) Reference genome:   Pseudomonas syringae ASM1839437v1 Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene Chr - NZ_CP074578.1 CP074578.1 5.83 59.0 4,997 16 63 4 5,159 79 Plsm p_unamed1 NZ_CP074579.1 CP074579.1 0.04 52.6 45 - - - 51 6 Dendrogram (based on genomic BLAST) External Resources Cornell University DOE Joint Genome Institute P. syringae Genome Resources SYSTOMONAS TIGR