Salvelinus namaycush (ID 12815) - Genome

Salvelinus namaycush (lake trout)
Representative genome: Salvelinus namaycush (assembly SaNama_1.0)
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BLAST against Salvelinus namaycush genome

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ID: 12815

Organism Overview ; Organelle Annotation Report [1]

Salvelinus namaycush (lake trout)

Salvelinus namaycush overview

Lineage: Eukaryota[15558]; Metazoa[7784]; Chordata[3583]; Craniata[3548]; Vertebrata[3548]; Euteleostomi[3503]; Actinopterygii[1304]; Neopterygii[1295]; Teleostei[1292]; Protacanthopterygii[36]; Salmoniformes[21]; Salmonidae[21]; Salmoninae[15]; Salvelinus[4]; Salvelinus namaycush[1]

Summary

Submitter:

Universite Laval

Assembly level:

Chromosome

Assembly:

GCA_016432855.1 SaNama_1.0 scaffolds: 4,121 contigs: 7,385 N50: 1,804,090 L50: 252

BioProjects:

PRJNA690826

Whole Genome Shotgun (WGS):

INSDC: JAEAGN000000000.1

Statistics:

total length (Mb): 2345.51

protein count: 58230

GC%: 43.504

NCBI Annotation Release:

100

Replicon Info

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	1	NC_052307.1	CM028250.1	84.13	43.4	2,261	-	26	188	1,707	95

Chr	2	NC_052308.1	CM028261.1	80.9	43.2	2,323	2	223	278	2,078	120

Chr	3	NC_052309.1	CM028272.1	98.2	43.4	3,226	16	17	245	2,398	127

Chr	4	NC_052310.1	CM028283.1	84.64	43.2	2,021	-	15	158	1,477	61

Chr	5	NC_052311.1	CM028287.1	74.66	43.6	2,475	4	31	184	1,875	95

Chr	6	NC_052312.1	CM028288.1	53.24	43.8	1,434	-	67	95	1,174	75

Chr	7	NC_052313.1	CM028289.1	60.87	43.5	1,530	-	14	119	1,189	80

Chr	8	NC_052314.1	CM028290.1	66.76	43.1	1,661	-	28	182	1,372	88

Chr	9	NC_052315.1	CM028291.1	55.83	43.2	1,209	5	12	107	968	60

Chr	10	NC_052316.1	CM028251.1	50.03	43.5	1,321	-	22	70	895	34

Chr	11	NC_052317.1	CM028252.1	45.83	43.2	1,289	-	51	89	1,008	42

Chr	12	NC_052318.1	CM028253.1	53.58	43.2	1,517	1	40	128	1,162	68

Chr	13	NC_052319.1	CM028254.1	46.79	43.2	1,048	-	9	81	815	58

Chr	14	NC_052320.1	CM028255.1	42.62	43.4	1,230	-	57	111	1,002	54

Chr	15	NC_052321.1	CM028256.1	41.98	43.4	1,040	-	13	71	788	45

Chr	16	NC_052322.1	CM028257.1	49.27	43.5	1,508	7	91	113	1,172	68

Chr	17	NC_052323.1	CM028258.1	38.58	43.8	937	-	44	49	737	30

Chr	18	NC_052324.1	CM028259.1	44.55	43.5	1,128	-	36	84	899	63

Chr	19	NC_052325.1	CM028260.1	52.36	43.1	1,069	-	5	73	830	55

Chr	20	NC_052326.1	CM028262.1	57.37	43.1	1,509	-	12	97	1,111	83

Chr	21	NC_052327.1	CM028263.1	56.75	43.2	1,286	-	22	162	1,071	62

Chr	22	NC_052328.1	CM028264.1	36.59	43.2	784	1	4	61	621	22

Chr	23	NC_052329.1	CM028265.1	44.98	43.9	1,108	-	10	85	926	79

Chr	24	NC_052330.1	CM028266.1	37.73	43.6	924	-	7	68	714	27

Chr	25	NC_052331.1	CM028267.1	42.23	43.1	1,182	-	100	72	984	54

Chr	26	NC_052332.1	CM028268.1	43.8	43.4	1,135	-	11	110	943	60

Chr	27	NC_052333.1	CM028269.1	39.9	43.7	1,063	-	65	76	882	43

Chr	28	NC_052334.1	CM028270.1	46.73	43.5	961	-	3	124	807	60

Chr	29	NC_052335.1	CM028271.1	37.92	43.3	856	-	12	136	739	42

Chr	30	NC_052336.1	CM028273.1	35.58	43.5	924	-	18	82	655	33

Chr	31	NC_052337.1	CM028274.1	48.34	43.5	1,319	-	46	197	1,153	65

Chr	32	NC_052338.1	CM028275.1	37.24	43.6	1,020	-	15	86	787	27

Chr	33	NC_052339.1	CM028276.1	37.34	43.4	763	-	37	62	577	27

Chr	34	NC_052340.1	CM028277.1	42.03	43.9	1,128	-	47	83	899	56

Chr	35	NC_052341.1	CM028278.1	34.53	43.3	919	-	11	47	686	37

Chr	36	NC_052342.1	CM028279.1	27.03	43.1	637	-	28	52	570	47

Chr	37	NC_052343.1	CM028280.1	32.12	43.8	1,204	-	11	64	888	47

Chr	38	NC_052344.1	CM028281.1	26.02	44.2	790	-	3	52	571	28

Chr	39	NC_052345.1	CM028282.1	23.59	43.4	844	-	6	110	675	43

Chr	40	NC_052346.1	CM028284.1	23.6	43.4	786	-	86	60	711	34

Chr	41	NC_052347.1	CM028285.1	22.04	43.5	873	-	11	66	692	28

Chr	42	NC_052348.1	CM028286.1	23.09	43.7	714	1	21	52	541	24

	MT	NC_036392.1	CM028292.1	0.02	46.0	13	2	22	-	37	-

Un	-	.	-	364.12	44.0	5,261	890	813	1,426	7,882	963

Chromosomes

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