Genome

Carya illinoinensis Carya illinoinensis Organism overview Lineage: Eukaryota[15557]; Viridiplantae[1758]; Streptophyta[1641]; Embryophyta[1630]; Tracheophyta[1603]; Spermatophyta[1585]; Magnoliopsida[1558]; eudicotyledons[1256]; Gunneridae[1256]; Pentapetalae[1256]; rosids[782]; fabids[449]; Fagales[55]; Juglandaceae[16]; Carya[2]; Carya illinoinensis[1]

Pecan is one of the most important commercial nut crops in the United States. The first step toward breeding programs directed at agronomic traits such as disease resistance or nut quality is generating a genetic map.

Summary Sequence data:  genome assemblies: 7; sequence reads: 1  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 651.238  median protein count: 62733  median GC%: 36.1 NCBI Annotation Release:  100 Publications (limited to 20 most recent records) Transcriptomic Analysis Provides Insights into Grafting Union Development in Pecan (Carya illinoinensis). Mo Z, et al. Genes (Basel) 2018 Feb 5 RNA-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes. Mattison CP, et al. J Agric Food Chem 2017 Feb 22  Representative (genome information for reference and representative genomes) Reference genome:   Carya illinoinensis C.illinoinensisPawnee_v1 Submitter: DOE Joint Genome Institute Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene Chr 1 NC_056752.1 CM031809.1 58.06 36.1 5,215 1 41 1,045 3,650 194 Chr 2 NC_056753.1 CM031810.1 37.48 36.1 3,491 - 33 612 2,417 125 Chr 3 NC_056754.1 CM031811.1 56.61 36.3 4,580 1 32 872 3,411 194 Chr 4 NC_056755.1 CM031812.1 44.96 36.4 3,178 - 24 675 2,442 150 Chr 5 NC_056756.1 CM031813.1 49.71 36.2 4,395 112 39 748 3,254 179 Chr 6 NC_056757.1 CM031814.1 37.2 36.4 2,940 - 30 623 2,178 131 Chr 7 NC_056758.1 CM031815.1 44.21 36.3 4,065 - 32 726 2,798 125 Chr 8 NC_056759.1 CM031816.1 38.5 36.2 3,127 - 20 625 2,264 135 Chr 9 NC_056760.1 CM031817.1 44.71 36.0 3,725 1 29 752 2,760 154 Chr 10 NC_056761.1 CM031818.1 39.83 36.4 2,786 - 25 555 2,120 128 Chr 11 NC_056762.1 CM031819.1 45.54 36.7 3,570 5,307 34 717 7,966 188 Chr 12 NC_056763.1 CM031820.1 30.99 36.6 2,401 - 24 476 1,744 95 Chr 13 NC_056764.1 CM031821.1 34.9 36.1 2,968 - 31 606 2,213 153 Chr 14 NC_056765.1 CM031822.1 33.86 36.0 2,571 1 20 604 1,826 130 Chr 15 NC_056766.1 CM031823.1 47.09 36.8 3,300 383 9 960 2,708 167 Chr 16 NC_056767.1 CM031824.1 30.63 36.3 2,089 1 7 453 1,555 119 Pltd NC_041449.1 - 0.16 36.1 83 8 32 - 123 - Un - . - 674.09 36.3 - - - - - - Chromosomes Click on chromosome name to open Genome Data Viewer