Genome

Lachnoclostridium Lachnoclostridium sp. overview Lineage: Bacteria[37505]; Bacillota[6130]; Clostridia[2684]; Lachnospirales[867]; Lachnospiraceae[844]; Lachnoclostridium[17]

Isolates from a population of Lachnoclostridium which are clearly distinct from currently recognized species are tentatively designated at the species level. These unnamed isolates have not yet been characterized using traditional methods, or the species name has not yet been validly published.

Summary Sequence data:  genome assemblies: 341; sequence reads: 17  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 2.94499  median protein count: 2658  median GC%: 45.6 Publications (limited to 20 most recent records) Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa. Magnúsdóttir S, et al. Front Microbiol 2023 The Parkinson's drug entacapone disrupts gut microbiome homeostasis via iron sequestration. Pereira FC, et al. bioRxiv 2023 Nov 13 The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping. Beresford-Jones BS, et al. Cell Host Microbe 2022 Jan 12 Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes. Peng X, et al. Nat Microbiol 2021 Apr The distribution of antibiotic resistance genes in chicken gut microbiota commensals. Juricova H, et al. Sci Rep 2021 Feb 8 A Metagenomics Investigation of Intergenerational Effects of Non-nutritive Sweeteners on Gut Microbiome. Wang W, et al. Front Nutr 2021 MGnify: the microbiome analysis resource in 2020. Mitchell AL, et al. Nucleic Acids Res 2020 Jan 8 Links between environment, diet, and the hunter-gatherer microbiome. Fragiadakis GK, et al. Gut Microbes 2019 EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Mitchell AL, et al. Nucleic Acids Res 2018 Jan 4 Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures. Medvecky M, et al. BMC Genomics 2018 Jul 31 A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Parks DH, et al. Nat Biotechnol 2018 Nov Gut microbiome transition across a lifestyle gradient in Himalaya. Jha AR, et al. PLoS Biol 2018 Nov Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania. Smits SA, et al. Science 2017 Aug 25 Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Parks DH, et al. Nat Microbiol 2017 Nov The outer mucus layer hosts a distinct intestinal microbial niche. Li H, et al. Nat Commun 2015 Sep 22 More... Dendrogram (based on genomic BLAST)