Parus major (ID 12863) - Genome

Parus major (Great Tit)
Representative genome: Parus major (assembly Parus_major1.1)
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BLAST against Parus major genome, transcript, protein

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ID: 12863

Organism Overview ; Organelle Annotation Report [1]

Parus major (Great Tit)

Parus major overview

Lineage: Eukaryota[15557]; Metazoa[7782]; Chordata[3579]; Craniata[3544]; Vertebrata[3544]; Euteleostomi[3500]; Archelosauria[1076]; Archosauria[1039]; Dinosauria[1034]; Saurischia[1034]; Theropoda[1034]; Coelurosauria[1034]; Aves[1034]; Neognathae[1009]; Passeriformes[351]; Paridae[6]; Parus[1]; Parus major[1]

Summary

Submitter:

Animal Breeding and Genomics Centre, Wageningen University

Assembly level:

Chromosome

Assembly:

GCA_001522545.3 Parus_major1.1 scaffolds: 1,675 contigs: 24,044 N50: 148,693 L50: 1,868

BioProjects:

PRJNA312399

Whole Genome Shotgun (WGS):

INSDC: JRXK00000000.1

Statistics:

total length (Mb): 1020.31

protein count: 38619

GC%: 41.5208

NCBI Annotation Release:

102

Publications (limited to 20 most recent records)

Exploring the unmapped DNA and RNA reads in a songbird genome. Laine VN, et al. BMC Genomics 2019 Jan 8
Evolutionary signals of selection on cognition from the great tit genome and methylome. Laine VN, et al. Nat Commun 2016 Jan 25

Replicon Info

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	1	NC_031768.1	CM003709.1	114.06	39.5	3,082	-	18	733	1,495	7

Chr	2	NC_031769.1	CM003710.1	150.26	39.2	3,524	-	36	849	1,737	5

Chr	3	NC_031770.1	CM003711.1	111.64	39.6	2,898	-	12	722	1,479	3

Chr	4	NC_031771.1	CM003712.1	68.03	39.4	2,155	-	-	502	965	2

Chr	4A	NC_031772.1	CM003713.1	19.93	43.9	836	-	3	201	434	-

Chr	5	NC_031774.1	CM003715.1	61.88	41.0	2,513	-	6	475	1,151	2

Chr	1A	NC_031773.1	CM003714.1	71.37	39.9	2,411	1	5	446	1,073	4

Chr	6	NC_031775.1	CM003716.2	34.34	41.9	1,389	-	2	194	635	-

Chr	7	NC_031776.1	CM003717.2	37.65	41.2	1,484	-	18	294	634	1

Chr	8	NC_031777.1	CM003718.2	31.32	42.1	1,289	-	3	293	628	-

Chr	9	NC_031778.1	CM003719.1	25.11	43.1	1,216	-	2	241	541	-

Chr	10	NC_031779.1	CM003720.1	20.2	43.2	952	-	8	217	496	2

Chr	11	NC_031780.1	CM003721.1	20.32	42.8	876	-	13	215	480	-

Chr	12	NC_031781.1	CM003722.1	20.47	43.8	941	-	1	182	436	1

Chr	13	NC_031782.1	CM003723.1	16.48	44.8	789	-	-	102	379	2

Chr	14	NC_031783.1	CM003724.1	16.19	45.4	1,021	-	4	165	462	-

Chr	15	NC_031784.1	CM003725.1	13.82	46.6	967	-	5	182	453	1

Chr	17	NC_031785.1	CM003726.1	10.49	48.3	763	-	2	87	328	-

Chr	18	NC_031786.1	CM003727.1	11.57	47.4	806	-	9	127	377	-

Chr	19	NC_031787.1	CM003728.1	9.87	47.3	755	-	1	138	375	-

Chr	20	NC_031788.1	CM003729.1	14.66	46.6	802	-	2	116	403	-

Chr	21	NC_031789.1	CM003730.1	7.69	48.0	581	-	1	67	285	-

Chr	22	NC_031790.1	CM003731.1	4.28	50.9	341	-	1	43	194	1

Chr	23	NC_031791.1	CM003732.1	6.66	51.1	521	-	-	78	273	-

Chr	24	NC_031792.1	CM003733.1	6.81	49.7	398	-	-	33	192	1

Chr	25LG1	NC_031793.1	CM003734.1	1.09	55.4	179	-	-	16	89	-

Chr	26	NC_031795.1	CM003736.1	6.6	51.9	611	-	3	77	303	-

Chr	25LG2	NC_031794.1	CM003735.1	0.81	55.6	173	-	1	10	101	-

Chr	27	NC_031796.1	CM003737.1	4.33	51.3	441	-	-	39	251	5

Chr	28	NC_031797.1	CM003738.1	5.1	52.4	542	-	4	49	275	-

group	LGE22	NC_031798.1	CM003739.1	0.77	51.3	85	-	-	8	53	1

Chr	Z	NC_031799.1	CM003740.1	74.51	39.3	2,024	-	2	469	955	2

	MT	NC_040875.1	MH638304.1	0.02	47.7	13	2	22	-	37	-

Un	-	.	-	21.98	49.3	1,241	-	30	224	1,092	6

Chromosomes

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